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LDB3 (LIM domain binding 3)

Identity

Alias (NCBI)CMD1C
CMH24
CMPD3
CYPHER
LDB3Z1
LDB3Z4
LVNC3
MFM4
ORACLE
PDLIM6
ZASP
HGNC (Hugo) LDB3
HGNC Alias symbPDLIM6
KIAA0613
ZASP
HGNC Alias namecypher
 oracle
 Z-band alternatively spliced PDZ motif protein
HGNC Previous nameCMD1C
HGNC Previous namecardiomyopathy, dilated 1C (autosomal dominant)
LocusID (NCBI) 11155
Atlas_Id 50933
Location 10q23.2  [Link to chromosome band 10q23]
Location_base_pair Starts at 86668511 and ends at 86736072 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DPP9 (19p13.3) / LDB3 (10q23.2)GTF2A2 (15q22.2) / LDB3 (10q23.2)LDB3 (10q23.2) / CDC5L (6p21.1)
LDB3 (10q23.2) / GABARAPL1 (12p13.2)LDB3 (10q23.2) / TUBB4A (19p13.3)SNHG1 (11q12.3) / LDB3 (10q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LDB3   15710
LRG (Locus Reference Genomic)LRG_385
Cards
Entrez_Gene (NCBI)LDB3    LIM domain binding 3
AliasesCMD1C; CMH24; CMPD3; CYPHER; 
LDB3Z1; LDB3Z4; LVNC3; MFM4; ORACLE; PDLIM6; ZASP
GeneCards (Weizmann)LDB3
Ensembl hg19 (Hinxton)ENSG00000122367 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122367 [Gene_View]  ENSG00000122367 [Sequence]  chr10:86668511-86736072 [Contig_View]  LDB3 [Vega]
ICGC DataPortalENSG00000122367
TCGA cBioPortalLDB3
AceView (NCBI)LDB3
Genatlas (Paris)LDB3
SOURCE (Princeton)LDB3
Genetics Home Reference (NIH)LDB3
Genomic and cartography
GoldenPath hg38 (UCSC)LDB3  -     chr10:86668511-86736072 +  10q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LDB3  -     10q23.2   [Description]    (hg19-Feb_2009)
GoldenPathLDB3 - 10q23.2 [CytoView hg19]  LDB3 - 10q23.2 [CytoView hg38]
ImmunoBaseENSG00000122367
Genome Data Viewer NCBILDB3 [Mapview hg19]  
OMIM601493   605906   609452   
Gene and transcription
Genbank (Entrez)AA180065 AB014513 AF086263 AF276807 AF276808
RefSeq transcript (Entrez)NM_001080114 NM_001080115 NM_001080116 NM_001171610 NM_001171611 NM_001368063 NM_001368064 NM_001368065 NM_001368066 NM_001368067 NM_001368068 NM_007078
Consensus coding sequences : CCDS (NCBI)LDB3
Gene ExpressionLDB3 [ NCBI-GEO ]   LDB3 [ EBI - ARRAY_EXPRESS ]   LDB3 [ SEEK ]   LDB3 [ MEM ]
Gene Expression Viewer (FireBrowse)LDB3 [ Firebrowse - Broad ]
GenevisibleExpression of LDB3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11155
GTEX Portal (Tissue expression)LDB3
Human Protein AtlasENSG00000122367-LDB3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LDB3
Human Protein Atlas [tissue]ENSG00000122367-LDB3 [tissue]
HPRD16172
Protein Interaction databases
BioGRIDLDB3
STRING (EMBL)LDB3
ZODIACLDB3
Ontologies - Pathways
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLDB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:15:42 CEST 2021

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