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LDB3 (LIM domain binding 3)

Identity

Other namesCMD1C
CMPD3
CYPHER
LDB3Z1
LDB3Z4
LVNC3
MFM4
ORACLE
PDLIM6
ZASP
HGNC (Hugo) LDB3
LocusID (NCBI) 11155
Location 10q23.2
Location_base_pair Starts at 88428426 and ends at 88495824 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LDB3   15710
Cards
Entrez_Gene (NCBI)LDB3  11155  LIM domain binding 3
GeneCards (Weizmann)LDB3
Ensembl (Hinxton)ENSG00000122367 [Gene_View]  chr10:88428426-88495824 [Contig_View]  LDB3 [Vega]
ICGC DataPortalENSG00000122367
cBioPortalLDB3
AceView (NCBI)LDB3
Genatlas (Paris)LDB3
WikiGenes11155
SOURCE (Princeton)NM_001080114 NM_001080115 NM_001080116 NM_001171610 NM_001171611 NM_007078
Genomic and cartography
GoldenPath (UCSC)LDB3  -  10q23.2   chr10:88428426-88495824 +  10q23.2   [Description]    (hg19-Feb_2009)
EnsemblLDB3 - 10q23.2 [CytoView]
Mapping of homologs : NCBILDB3 [Mapview]
OMIM601493   605906   609452   
Gene and transcription
Genbank (Entrez)AA180065 AB014513 AF086263 AF276807 AF276808
RefSeq transcript (Entrez)NM_001080114 NM_001080115 NM_001080116 NM_001171610 NM_001171611 NM_007078
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NG_008876 NT_030059 NW_001837992 NW_004929376
Consensus coding sequences : CCDS (NCBI)LDB3
Cluster EST : UnigeneHs.657271 [ NCBI ]
CGAP (NCI)Hs.657271
Alternative Splicing : Fast-db (Paris)GSHG0033146
Alternative Splicing GalleryENSG00000122367
Gene ExpressionLDB3 [ NCBI-GEO ]     LDB3 [ SEEK ]   LDB3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75112 (Uniprot)
NextProtO75112  [Medical]
With graphics : InterProO75112
Splice isoforms : SwissVarO75112 (Swissvar)
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)    PDZ (PS50106)   
Domains : Interpro (EBI)PDZ [organisation]   ZASP [organisation]   Znf_LIM [organisation]  
Related proteins : CluSTrO75112
Domain families : Pfam (Sanger)LIM (PF00412)    PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00412    pfam00595   
Domain families : Smart (EMBL)LIM (SM00132)  PDZ (SM00228)  ZM (SM00735)  
DMDM Disease mutations11155
Blocks (Seattle)O75112
PDB (SRS)1RGW   
PDB (PDBSum)1RGW   
PDB (IMB)1RGW   
PDB (RSDB)1RGW   
Human Protein AtlasENSG00000122367 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO75112
HPRD16172
IPIIPI00514458   IPI00294959   IPI00294958   IPI00552865   IPI00654766   IPI00165263   IPI00909356   IPI01009910   IPI00909817   IPI00978614   IPI00978988   
Protein Interaction databases
DIP (DOE-UCLA)O75112
IntAct (EBI)O75112
FunCoupENSG00000122367
BioGRIDLDB3
InParanoidO75112
Interologous Interaction database O75112
IntegromeDBLDB3
STRING (EMBL)LDB3
Ontologies - Pathways
Ontology : AmiGOprotein kinase C binding  protein binding  cytoskeleton  cytoskeletal protein binding  zinc ion binding  Z disc  pseudopodium  sarcomere organization  perinuclear region of cytoplasm  muscle alpha-actinin binding  
Ontology : EGO-EBIprotein kinase C binding  protein binding  cytoskeleton  cytoskeletal protein binding  zinc ion binding  Z disc  pseudopodium  sarcomere organization  perinuclear region of cytoplasm  muscle alpha-actinin binding  
Protein Interaction DatabaseLDB3
Wikipedia pathwaysLDB3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LDB3
snp3D : Map Gene to Disease11155
SNP (GeneSNP Utah)LDB3
SNP : HGBaseLDB3
Genetic variants : HAPMAPLDB3
Exome VariantLDB3
1000_GenomesLDB3 
ICGC programENSG00000122367 
Somatic Mutations in Cancer : COSMICLDB3 
CONAN: Copy Number AnalysisLDB3 
Mutations and Diseases : HGMDLDB3
Mutations and Diseases : intOGenLDB3
Genomic VariantsLDB3  LDB3 [DGVbeta]
dbVarLDB3
ClinVarLDB3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM601493    605906    609452   
MedgenLDB3
GENETestsLDB3
Disease Genetic AssociationLDB3
Huge Navigator LDB3 [HugePedia]  LDB3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneLDB3
Homology/Alignments : Family Browser (UCSC)LDB3
Phylogenetic Trees/Animal Genes : TreeFamLDB3
Chemical/Protein Interactions : CTD11155
Chemical/Pharm GKB GenePA30318
Clinical trialLDB3
Cancer Resource (Charite)ENSG00000122367
Other databases
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
CoreMineLDB3
iHOPLDB3
OncoSearchLDB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:59:05 CEST 2014

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