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LDHAL6A (lactate dehydrogenase A like 6A)

Identity

Alias_symbol (synonym)MGC23940
LDH6A
Other alias
HGNC (Hugo) LDHAL6A
LocusID (NCBI) 160287
Atlas_Id 65218
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 18455827 and ends at 18479600 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NAP1L1 (12q21.2) / LDHAL6A (11p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LDHAL6A   28335
Cards
Entrez_Gene (NCBI)LDHAL6A  160287  lactate dehydrogenase A like 6A
AliasesLDH6A
GeneCards (Weizmann)LDHAL6A
Ensembl hg19 (Hinxton)ENSG00000166800 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166800 [Gene_View]  chr11:18455827-18479600 [Contig_View]  LDHAL6A [Vega]
ICGC DataPortalENSG00000166800
TCGA cBioPortalLDHAL6A
AceView (NCBI)LDHAL6A
Genatlas (Paris)LDHAL6A
WikiGenes160287
SOURCE (Princeton)LDHAL6A
Genetics Home Reference (NIH)LDHAL6A
Genomic and cartography
GoldenPath hg38 (UCSC)LDHAL6A  -     chr11:18455827-18479600 +  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LDHAL6A  -     11p15.1   [Description]    (hg19-Feb_2009)
EnsemblLDHAL6A - 11p15.1 [CytoView hg19]  LDHAL6A - 11p15.1 [CytoView hg38]
Mapping of homologs : NCBILDHAL6A [Mapview hg19]  LDHAL6A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131523 AY581313 BC014340
RefSeq transcript (Entrez)NM_001144071 NM_144972
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LDHAL6A
Cluster EST : UnigeneHs.668877 [ NCBI ]
CGAP (NCI)Hs.668877
Alternative Splicing GalleryENSG00000166800
Gene ExpressionLDHAL6A [ NCBI-GEO ]   LDHAL6A [ EBI - ARRAY_EXPRESS ]   LDHAL6A [ SEEK ]   LDHAL6A [ MEM ]
Gene Expression Viewer (FireBrowse)LDHAL6A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)160287
GTEX Portal (Tissue expression)LDHAL6A
Human Protein AtlasENSG00000166800-LDHAL6A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMR3
Splice isoforms : SwissVarQ6ZMR3
PhosPhoSitePlusQ6ZMR3
Domaine pattern : Prosite (Expaxy)L_LDH (PS00064)   
Domains : Interpro (EBI)L-lactate/malate_DH    L-lactate_DH    L-lactate_DH_AS    Lactate/malate_DH_C    Lactate/malate_DH_N    Lactate_DH/Glyco_Ohase_4_C    NAD(P)-bd_dom   
Domain families : Pfam (Sanger)Ldh_1_C (PF02866)    Ldh_1_N (PF00056)   
Domain families : Pfam (NCBI)pfam02866    pfam00056   
Conserved Domain (NCBI)LDHAL6A
DMDM Disease mutations160287
Blocks (Seattle)LDHAL6A
SuperfamilyQ6ZMR3
Human Protein Atlas [tissue]ENSG00000166800-LDHAL6A [tissue]
Peptide AtlasQ6ZMR3
HPRD13980
IPIIPI00148061   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMR3
IntAct (EBI)Q6ZMR3
FunCoupENSG00000166800
BioGRIDLDHAL6A
STRING (EMBL)LDHAL6A
ZODIACLDHAL6A
Ontologies - Pathways
QuickGOQ6ZMR3
Ontology : AmiGOL-lactate dehydrogenase activity  cytoplasm  carbohydrate metabolic process  carboxylic acid metabolic process  oxidation-reduction process  extracellular exosome  
Ontology : EGO-EBIL-lactate dehydrogenase activity  cytoplasm  carbohydrate metabolic process  carboxylic acid metabolic process  oxidation-reduction process  extracellular exosome  
Pathways : KEGGGlycolysis / Gluconeogenesis    Cysteine and methionine metabolism    Pyruvate metabolism    Propanoate metabolism   
NDEx NetworkLDHAL6A
Atlas of Cancer Signalling NetworkLDHAL6A
Wikipedia pathwaysLDHAL6A
Orthology - Evolution
OrthoDB160287
GeneTree (enSembl)ENSG00000166800
Phylogenetic Trees/Animal Genes : TreeFamLDHAL6A
HOVERGENQ6ZMR3
HOGENOMQ6ZMR3
Homologs : HomoloGeneLDHAL6A
Homology/Alignments : Family Browser (UCSC)LDHAL6A
Gene fusions - Rearrangements
Tumor Fusion PortalLDHAL6A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLDHAL6A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LDHAL6A
dbVarLDHAL6A
ClinVarLDHAL6A
1000_GenomesLDHAL6A 
Exome Variant ServerLDHAL6A
ExAC (Exome Aggregation Consortium)ENSG00000166800
GNOMAD BrowserENSG00000166800
Genetic variants : HAPMAP160287
Genomic Variants (DGV)LDHAL6A [DGVbeta]
DECIPHERLDHAL6A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLDHAL6A 
Mutations
ICGC Data PortalLDHAL6A 
TCGA Data PortalLDHAL6A 
Broad Tumor PortalLDHAL6A
OASIS PortalLDHAL6A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLDHAL6A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLDHAL6A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LDHAL6A
DgiDB (Drug Gene Interaction Database)LDHAL6A
DoCM (Curated mutations)LDHAL6A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LDHAL6A (select a term)
intoGenLDHAL6A
Cancer3DLDHAL6A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLDHAL6A
MedgenLDHAL6A
Genetic Testing Registry LDHAL6A
NextProtQ6ZMR3 [Medical]
TSGene160287
GENETestsLDHAL6A
Target ValidationLDHAL6A
Huge Navigator LDHAL6A [HugePedia]
snp3D : Map Gene to Disease160287
BioCentury BCIQLDHAL6A
ClinGenLDHAL6A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD160287
Chemical/Pharm GKB GenePA134950539
Clinical trialLDHAL6A
Miscellaneous
canSAR (ICR)LDHAL6A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLDHAL6A
EVEXLDHAL6A
GoPubMedLDHAL6A
iHOPLDHAL6A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:23:42 CET 2017

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