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LDHAL6B (lactate dehydrogenase A-like 6B)

Identity

Alias_namesLDHAL6
lactate dehydrogenase A-like 6
Alias_symbol (synonym)LDHL
LDH6B
Other alias
HGNC (Hugo) LDHAL6B
LocusID (NCBI) 92483
Atlas_Id 47195
Location 15q22.2  [Link to chromosome band 15q22]
Location_base_pair Starts at 59499015 and ends at 59500785 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LDHAL6B   21481
Cards
Entrez_Gene (NCBI)LDHAL6B  92483  lactate dehydrogenase A-like 6B
AliasesLDH6B; LDHAL6; LDHL
GeneCards (Weizmann)LDHAL6B
Ensembl hg19 (Hinxton)ENSG00000171989 [Gene_View]  chr15:59499015-59500785 [Contig_View]  LDHAL6B [Vega]
Ensembl hg38 (Hinxton)ENSG00000171989 [Gene_View]  chr15:59499015-59500785 [Contig_View]  LDHAL6B [Vega]
ICGC DataPortalENSG00000171989
TCGA cBioPortalLDHAL6B
AceView (NCBI)LDHAL6B
Genatlas (Paris)LDHAL6B
WikiGenes92483
SOURCE (Princeton)LDHAL6B
Genetics Home Reference (NIH)LDHAL6B
Genomic and cartography
GoldenPath hg19 (UCSC)LDHAL6B  -     chr15:59499015-59500785 +  15q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LDHAL6B  -     15q22.2   [Description]    (hg38-Dec_2013)
EnsemblLDHAL6B - 15q22.2 [CytoView hg19]  LDHAL6B - 15q22.2 [CytoView hg38]
Mapping of homologs : NCBILDHAL6B [Mapview hg19]  LDHAL6B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058192 AK312777 AY009108 AY642121 BC022034
RefSeq transcript (Entrez)NM_033195
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_031999 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)LDHAL6B
Cluster EST : UnigeneHs.307052 [ NCBI ]
CGAP (NCI)Hs.307052
Alternative Splicing GalleryENSG00000171989
Gene ExpressionLDHAL6B [ NCBI-GEO ]   LDHAL6B [ EBI - ARRAY_EXPRESS ]   LDHAL6B [ SEEK ]   LDHAL6B [ MEM ]
Gene Expression Viewer (FireBrowse)LDHAL6B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92483
GTEX Portal (Tissue expression)LDHAL6B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYZ2
Splice isoforms : SwissVarQ9BYZ2
PhosPhoSitePlusQ9BYZ2
Domaine pattern : Prosite (Expaxy)L_LDH (PS00064)   
Domains : Interpro (EBI)L-lactate/malate_DH    L-lactate_DH    L-lactate_DH_AS    Lactate/malate_DH_C    Lactate/malate_DH_N    Lactate_DH/Glyco_Ohase_4_C    NAD(P)-bd_dom   
Domain families : Pfam (Sanger)Ldh_1_C (PF02866)    Ldh_1_N (PF00056)   
Domain families : Pfam (NCBI)pfam02866    pfam00056   
Conserved Domain (NCBI)LDHAL6B
DMDM Disease mutations92483
Blocks (Seattle)LDHAL6B
SuperfamilyQ9BYZ2
Human Protein AtlasENSG00000171989
Peptide AtlasQ9BYZ2
HPRD13981
IPIIPI00016768   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYZ2
IntAct (EBI)Q9BYZ2
FunCoupENSG00000171989
BioGRIDLDHAL6B
STRING (EMBL)LDHAL6B
ZODIACLDHAL6B
Ontologies - Pathways
QuickGOQ9BYZ2
Ontology : AmiGOL-lactate dehydrogenase activity  protein binding  nucleus  mitochondrial matrix  carbohydrate metabolic process  pyruvate metabolic process  oxidation-reduction process  
Ontology : EGO-EBIL-lactate dehydrogenase activity  protein binding  nucleus  mitochondrial matrix  carbohydrate metabolic process  pyruvate metabolic process  oxidation-reduction process  
Pathways : KEGGGlycolysis / Gluconeogenesis    Cysteine and methionine metabolism    Pyruvate metabolism    Propanoate metabolism   
NDEx NetworkLDHAL6B
Atlas of Cancer Signalling NetworkLDHAL6B
Wikipedia pathwaysLDHAL6B
Orthology - Evolution
OrthoDB92483
GeneTree (enSembl)ENSG00000171989
Phylogenetic Trees/Animal Genes : TreeFamLDHAL6B
HOVERGENQ9BYZ2
HOGENOMQ9BYZ2
Homologs : HomoloGeneLDHAL6B
Homology/Alignments : Family Browser (UCSC)LDHAL6B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLDHAL6B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LDHAL6B
dbVarLDHAL6B
ClinVarLDHAL6B
1000_GenomesLDHAL6B 
Exome Variant ServerLDHAL6B
ExAC (Exome Aggregation Consortium)LDHAL6B (select the gene name)
Genetic variants : HAPMAP92483
Genomic Variants (DGV)LDHAL6B [DGVbeta]
DECIPHER (Syndromes)15:59499015-59500785  ENSG00000171989
CONAN: Copy Number AnalysisLDHAL6B 
Mutations
ICGC Data PortalLDHAL6B 
TCGA Data PortalLDHAL6B 
Broad Tumor PortalLDHAL6B
OASIS PortalLDHAL6B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLDHAL6B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLDHAL6B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch LDHAL6B
DgiDB (Drug Gene Interaction Database)LDHAL6B
DoCM (Curated mutations)LDHAL6B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LDHAL6B (select a term)
intoGenLDHAL6B
Cancer3DLDHAL6B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLDHAL6B
Genetic Testing Registry LDHAL6B
NextProtQ9BYZ2 [Medical]
TSGene92483
GENETestsLDHAL6B
Huge Navigator LDHAL6B [HugePedia]
snp3D : Map Gene to Disease92483
BioCentury BCIQLDHAL6B
ClinGenLDHAL6B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92483
Chemical/Pharm GKB GenePA134943157
Clinical trialLDHAL6B
Miscellaneous
canSAR (ICR)LDHAL6B (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLDHAL6B
EVEXLDHAL6B
GoPubMedLDHAL6B
iHOPLDHAL6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:06:50 CEST 2017

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