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LDHD (lactate dehydrogenase D)

Identity

Other aliasDLD
HGNC (Hugo) LDHD
LocusID (NCBI) 197257
Atlas_Id 53268
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 75145758 and ends at 75150670 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LDHD   19708
Cards
Entrez_Gene (NCBI)LDHD  197257  lactate dehydrogenase D
AliasesDLD
GeneCards (Weizmann)LDHD
Ensembl hg19 (Hinxton)ENSG00000166816 [Gene_View]  chr16:75145758-75150670 [Contig_View]  LDHD [Vega]
Ensembl hg38 (Hinxton)ENSG00000166816 [Gene_View]  chr16:75145758-75150670 [Contig_View]  LDHD [Vega]
ICGC DataPortalENSG00000166816
TCGA cBioPortalLDHD
AceView (NCBI)LDHD
Genatlas (Paris)LDHD
WikiGenes197257
SOURCE (Princeton)LDHD
Genetics Home Reference (NIH)LDHD
Genomic and cartography
GoldenPath hg19 (UCSC)LDHD  -     chr16:75145758-75150670 -  16q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LDHD  -     16q23.1   [Description]    (hg38-Dec_2013)
EnsemblLDHD - 16q23.1 [CytoView hg19]  LDHD - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBILDHD [Mapview hg19]  LDHD [Mapview hg38]
OMIM607490   
Gene and transcription
Genbank (Entrez)AY092767 BC040279 BC047902 BM544922
RefSeq transcript (Entrez)NM_153486 NM_194436
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)LDHD
Cluster EST : UnigeneHs.380929 [ NCBI ]
CGAP (NCI)Hs.380929
Alternative Splicing GalleryENSG00000166816
Gene ExpressionLDHD [ NCBI-GEO ]   LDHD [ EBI - ARRAY_EXPRESS ]   LDHD [ SEEK ]   LDHD [ MEM ]
Gene Expression Viewer (FireBrowse)LDHD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)197257
GTEX Portal (Tissue expression)LDHD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WU2
Splice isoforms : SwissVarQ86WU2
Catalytic activity : Enzyme1.1.2.4 [ Enzyme-Expasy ]   1.1.2.41.1.2.4 [ IntEnz-EBI ]   1.1.2.4 [ BRENDA ]   1.1.2.4 [ KEGG ]   
PhosPhoSitePlusQ86WU2
Domaine pattern : Prosite (Expaxy)FAD_PCMH (PS51387)   
Domains : Interpro (EBI)CO_DH_flavot_FAD-bd_sub2    FAD-bd_2    FAD-bd_2_sub1    FAD-linked_Oxase-like_C    FAD-linked_oxidase_C    Oxid_FAD_bind_N    Vanillyl_alc_oxidase_C-sub2   
Domain families : Pfam (Sanger)FAD-oxidase_C (PF02913)    FAD_binding_4 (PF01565)   
Domain families : Pfam (NCBI)pfam02913    pfam01565   
Conserved Domain (NCBI)LDHD
DMDM Disease mutations197257
Blocks (Seattle)LDHD
SuperfamilyQ86WU2
Human Protein AtlasENSG00000166816
Peptide AtlasQ86WU2
HPRD06318
IPIIPI00329133   IPI00218015   
Protein Interaction databases
DIP (DOE-UCLA)Q86WU2
IntAct (EBI)Q86WU2
FunCoupENSG00000166816
BioGRIDLDHD
STRING (EMBL)LDHD
ZODIACLDHD
Ontologies - Pathways
QuickGOQ86WU2
Ontology : AmiGOD-lactate dehydrogenase (cytochrome) activity  protein binding  mitochondrion  mitochondrial inner membrane  flavin adenine dinucleotide binding  oxidation-reduction process  
Ontology : EGO-EBID-lactate dehydrogenase (cytochrome) activity  protein binding  mitochondrion  mitochondrial inner membrane  flavin adenine dinucleotide binding  oxidation-reduction process  
Pathways : KEGGPyruvate metabolism   
NDEx NetworkLDHD
Atlas of Cancer Signalling NetworkLDHD
Wikipedia pathwaysLDHD
Orthology - Evolution
OrthoDB197257
GeneTree (enSembl)ENSG00000166816
Phylogenetic Trees/Animal Genes : TreeFamLDHD
HOVERGENQ86WU2
HOGENOMQ86WU2
Homologs : HomoloGeneLDHD
Homology/Alignments : Family Browser (UCSC)LDHD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLDHD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LDHD
dbVarLDHD
ClinVarLDHD
1000_GenomesLDHD 
Exome Variant ServerLDHD
ExAC (Exome Aggregation Consortium)LDHD (select the gene name)
Genetic variants : HAPMAP197257
Genomic Variants (DGV)LDHD [DGVbeta]
DECIPHER (Syndromes)16:75145758-75150670  ENSG00000166816
CONAN: Copy Number AnalysisLDHD 
Mutations
ICGC Data PortalLDHD 
TCGA Data PortalLDHD 
Broad Tumor PortalLDHD
OASIS PortalLDHD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLDHD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLDHD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch LDHD
DgiDB (Drug Gene Interaction Database)LDHD
DoCM (Curated mutations)LDHD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LDHD (select a term)
intoGenLDHD
Cancer3DLDHD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607490   
Orphanet
MedgenLDHD
Genetic Testing Registry LDHD
NextProtQ86WU2 [Medical]
TSGene197257
GENETestsLDHD
Huge Navigator LDHD [HugePedia]
snp3D : Map Gene to Disease197257
BioCentury BCIQLDHD
ClinGenLDHD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD197257
Chemical/Pharm GKB GenePA134917525
Clinical trialLDHD
Miscellaneous
canSAR (ICR)LDHD (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLDHD
EVEXLDHD
GoPubMedLDHD
iHOPLDHD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:12:37 CET 2017

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