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LDLRAD1 (low density lipoprotein receptor class A domain containing 1)

Identity

Alias_nameslow density lipoprotein receptor A domain containing 1
Other alias-
HGNC (Hugo) LDLRAD1
LocusID (NCBI) 388633
Atlas_Id 65219
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 54007298 and ends at 54018186 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LDLRAD1 (1p32.3) / FGGY (1p32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LDLRAD1   32069
Cards
Entrez_Gene (NCBI)LDLRAD1  388633  low density lipoprotein receptor class A domain containing 1
Aliases
GeneCards (Weizmann)LDLRAD1
Ensembl hg19 (Hinxton)ENSG00000203985 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203985 [Gene_View]  chr1:54007298-54018186 [Contig_View]  LDLRAD1 [Vega]
ICGC DataPortalENSG00000203985
TCGA cBioPortalLDLRAD1
AceView (NCBI)LDLRAD1
Genatlas (Paris)LDLRAD1
WikiGenes388633
SOURCE (Princeton)LDLRAD1
Genetics Home Reference (NIH)LDLRAD1
Genomic and cartography
GoldenPath hg38 (UCSC)LDLRAD1  -     chr1:54007298-54018186 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LDLRAD1  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblLDLRAD1 - 1p32.3 [CytoView hg19]  LDLRAD1 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBILDLRAD1 [Mapview hg19]  LDLRAD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC103740 BC127708 BC127709 BC140760 BC144466
RefSeq transcript (Entrez)NM_001010978 NM_001276392 NM_001276393 NM_001276394 NM_001276395
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LDLRAD1
Cluster EST : UnigeneHs.439583 [ NCBI ]
CGAP (NCI)Hs.439583
Alternative Splicing GalleryENSG00000203985
Gene ExpressionLDLRAD1 [ NCBI-GEO ]   LDLRAD1 [ EBI - ARRAY_EXPRESS ]   LDLRAD1 [ SEEK ]   LDLRAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)LDLRAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388633
GTEX Portal (Tissue expression)LDLRAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T700   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T700  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T700
Splice isoforms : SwissVarQ5T700
PhosPhoSitePlusQ5T700
Domaine pattern : Prosite (Expaxy)LDLRA_1 (PS01209)    LDLRA_2 (PS50068)   
Domains : Interpro (EBI)LDrepeatLR_classA_rpt   
Domain families : Pfam (Sanger)Ldl_recept_a (PF00057)   
Domain families : Pfam (NCBI)pfam00057   
Domain families : Smart (EMBL)LDLa (SM00192)  
Conserved Domain (NCBI)LDLRAD1
DMDM Disease mutations388633
Blocks (Seattle)LDLRAD1
SuperfamilyQ5T700
Human Protein AtlasENSG00000203985
Peptide AtlasQ5T700
HPRD17372
IPIIPI00373998   IPI00816393   IPI00514984   IPI00922292   
Protein Interaction databases
DIP (DOE-UCLA)Q5T700
IntAct (EBI)Q5T700
FunCoupENSG00000203985
BioGRIDLDLRAD1
STRING (EMBL)LDLRAD1
ZODIACLDLRAD1
Ontologies - Pathways
QuickGOQ5T700
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkLDLRAD1
Atlas of Cancer Signalling NetworkLDLRAD1
Wikipedia pathwaysLDLRAD1
Orthology - Evolution
OrthoDB388633
GeneTree (enSembl)ENSG00000203985
Phylogenetic Trees/Animal Genes : TreeFamLDLRAD1
HOVERGENQ5T700
HOGENOMQ5T700
Homologs : HomoloGeneLDLRAD1
Homology/Alignments : Family Browser (UCSC)LDLRAD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLDLRAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LDLRAD1
dbVarLDLRAD1
ClinVarLDLRAD1
1000_GenomesLDLRAD1 
Exome Variant ServerLDLRAD1
ExAC (Exome Aggregation Consortium)LDLRAD1 (select the gene name)
Genetic variants : HAPMAP388633
Genomic Variants (DGV)LDLRAD1 [DGVbeta]
DECIPHERLDLRAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLDLRAD1 
Mutations
ICGC Data PortalLDLRAD1 
TCGA Data PortalLDLRAD1 
Broad Tumor PortalLDLRAD1
OASIS PortalLDLRAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLDLRAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLDLRAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LDLRAD1
DgiDB (Drug Gene Interaction Database)LDLRAD1
DoCM (Curated mutations)LDLRAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LDLRAD1 (select a term)
intoGenLDLRAD1
Cancer3DLDLRAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLDLRAD1
Genetic Testing Registry LDLRAD1
NextProtQ5T700 [Medical]
TSGene388633
GENETestsLDLRAD1
Target ValidationLDLRAD1
Huge Navigator LDLRAD1 [HugePedia]
snp3D : Map Gene to Disease388633
BioCentury BCIQLDLRAD1
ClinGenLDLRAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388633
Chemical/Pharm GKB GenePA142671554
Clinical trialLDLRAD1
Miscellaneous
canSAR (ICR)LDLRAD1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLDLRAD1
EVEXLDLRAD1
GoPubMedLDLRAD1
iHOPLDLRAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:37 CEST 2017

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