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LDLRAD2 (low density lipoprotein receptor class A domain containing 2)

Identity

Alias_nameslow density lipoprotein receptor A domain containing 2
Other alias-
HGNC (Hugo) LDLRAD2
LocusID (NCBI) 401944
Atlas_Id 65220
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 21812265 and ends at 21825221 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LDLRAD2 (1p36.12) / LDLRAD2 (1p36.12)LDLRAD2 (1p36.12) / MGAT4C (12q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LDLRAD2   32071
Cards
Entrez_Gene (NCBI)LDLRAD2  401944  low density lipoprotein receptor class A domain containing 2
Aliases
GeneCards (Weizmann)LDLRAD2
Ensembl hg19 (Hinxton)ENSG00000187942 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187942 [Gene_View]  chr1:21812265-21825221 [Contig_View]  LDLRAD2 [Vega]
ICGC DataPortalENSG00000187942
TCGA cBioPortalLDLRAD2
AceView (NCBI)LDLRAD2
Genatlas (Paris)LDLRAD2
WikiGenes401944
SOURCE (Princeton)LDLRAD2
Genetics Home Reference (NIH)LDLRAD2
Genomic and cartography
GoldenPath hg38 (UCSC)LDLRAD2  -     chr1:21812265-21825221 +  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LDLRAD2  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblLDLRAD2 - 1p36.12 [CytoView hg19]  LDLRAD2 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBILDLRAD2 [Mapview hg19]  LDLRAD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127275 BC043362 BC146860
RefSeq transcript (Entrez)NM_001013693
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LDLRAD2
Cluster EST : UnigeneHs.745158 [ NCBI ]
CGAP (NCI)Hs.745158
Alternative Splicing GalleryENSG00000187942
Gene ExpressionLDLRAD2 [ NCBI-GEO ]   LDLRAD2 [ EBI - ARRAY_EXPRESS ]   LDLRAD2 [ SEEK ]   LDLRAD2 [ MEM ]
Gene Expression Viewer (FireBrowse)LDLRAD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401944
GTEX Portal (Tissue expression)LDLRAD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SZI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SZI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SZI1
Splice isoforms : SwissVarQ5SZI1
PhosPhoSitePlusQ5SZI1
Domaine pattern : Prosite (Expaxy)LDLRA_2 (PS50068)   
Domains : Interpro (EBI)CUB_dom    LDrepeatLR_classA_rpt   
Domain families : Pfam (Sanger)Ldl_recept_a (PF00057)   
Domain families : Pfam (NCBI)pfam00057   
Domain families : Smart (EMBL)LDLa (SM00192)  
Conserved Domain (NCBI)LDLRAD2
DMDM Disease mutations401944
Blocks (Seattle)LDLRAD2
SuperfamilyQ5SZI1
Human Protein AtlasENSG00000187942
Peptide AtlasQ5SZI1
HPRD18436
IPIIPI00418890   
Protein Interaction databases
DIP (DOE-UCLA)Q5SZI1
IntAct (EBI)Q5SZI1
FunCoupENSG00000187942
BioGRIDLDLRAD2
STRING (EMBL)LDLRAD2
ZODIACLDLRAD2
Ontologies - Pathways
QuickGOQ5SZI1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLDLRAD2
Atlas of Cancer Signalling NetworkLDLRAD2
Wikipedia pathwaysLDLRAD2
Orthology - Evolution
OrthoDB401944
GeneTree (enSembl)ENSG00000187942
Phylogenetic Trees/Animal Genes : TreeFamLDLRAD2
HOVERGENQ5SZI1
HOGENOMQ5SZI1
Homologs : HomoloGeneLDLRAD2
Homology/Alignments : Family Browser (UCSC)LDLRAD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLDLRAD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LDLRAD2
dbVarLDLRAD2
ClinVarLDLRAD2
1000_GenomesLDLRAD2 
Exome Variant ServerLDLRAD2
ExAC (Exome Aggregation Consortium)LDLRAD2 (select the gene name)
Genetic variants : HAPMAP401944
Genomic Variants (DGV)LDLRAD2 [DGVbeta]
DECIPHERLDLRAD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLDLRAD2 
Mutations
ICGC Data PortalLDLRAD2 
TCGA Data PortalLDLRAD2 
Broad Tumor PortalLDLRAD2
OASIS PortalLDLRAD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLDLRAD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLDLRAD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LDLRAD2
DgiDB (Drug Gene Interaction Database)LDLRAD2
DoCM (Curated mutations)LDLRAD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LDLRAD2 (select a term)
intoGenLDLRAD2
Cancer3DLDLRAD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLDLRAD2
Genetic Testing Registry LDLRAD2
NextProtQ5SZI1 [Medical]
TSGene401944
GENETestsLDLRAD2
Target ValidationLDLRAD2
Huge Navigator LDLRAD2 [HugePedia]
snp3D : Map Gene to Disease401944
BioCentury BCIQLDLRAD2
ClinGenLDLRAD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401944
Chemical/Pharm GKB GenePA142671555
Clinical trialLDLRAD2
Miscellaneous
canSAR (ICR)LDLRAD2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLDLRAD2
EVEXLDLRAD2
GoPubMedLDLRAD2
iHOPLDLRAD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 16:19:05 CEST 2017

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