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LECT2 (leukocyte cell derived chemotaxin 2)

Identity

Alias_namesleukocyte cell-derived chemotaxin 2
Alias_symbol (synonym)chm-II
chm2
Other alias
HGNC (Hugo) LECT2
LocusID (NCBI) 3950
Atlas_Id 52494
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 135946911 and ends at 135955034 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LECT2   6550
Cards
Entrez_Gene (NCBI)LECT2  3950  leukocyte cell derived chemotaxin 2
Aliaseschm-II; chm2
GeneCards (Weizmann)LECT2
Ensembl hg19 (Hinxton)ENSG00000145826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145826 [Gene_View]  chr5:135946911-135955034 [Contig_View]  LECT2 [Vega]
ICGC DataPortalENSG00000145826
TCGA cBioPortalLECT2
AceView (NCBI)LECT2
Genatlas (Paris)LECT2
WikiGenes3950
SOURCE (Princeton)LECT2
Genetics Home Reference (NIH)LECT2
Genomic and cartography
GoldenPath hg38 (UCSC)LECT2  -     chr5:135946911-135955034 -  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LECT2  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblLECT2 - 5q31.1 [CytoView hg19]  LECT2 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBILECT2 [Mapview hg19]  LECT2 [Mapview hg38]
OMIM602882   
Gene and transcription
Genbank (Entrez)AK314092 AV661075 BC093670 BC101579 BI825931
RefSeq transcript (Entrez)NM_002302
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LECT2
Cluster EST : UnigeneHs.512580 [ NCBI ]
CGAP (NCI)Hs.512580
Alternative Splicing GalleryENSG00000145826
Gene ExpressionLECT2 [ NCBI-GEO ]   LECT2 [ EBI - ARRAY_EXPRESS ]   LECT2 [ SEEK ]   LECT2 [ MEM ]
Gene Expression Viewer (FireBrowse)LECT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3950
GTEX Portal (Tissue expression)LECT2
Human Protein AtlasENSG00000145826-LECT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14960   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14960  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14960
Splice isoforms : SwissVarO14960
PhosPhoSitePlusO14960
Domains : Interpro (EBI)LECT2    LECT2_chordata    Peptidase_M23   
Domain families : Pfam (Sanger)Peptidase_M23 (PF01551)   
Domain families : Pfam (NCBI)pfam01551   
Conserved Domain (NCBI)LECT2
DMDM Disease mutations3950
Blocks (Seattle)LECT2
PDB (SRS)5B0H   
PDB (PDBSum)5B0H   
PDB (IMB)5B0H   
PDB (RSDB)5B0H   
Structural Biology KnowledgeBase5B0H   
SCOP (Structural Classification of Proteins)5B0H   
CATH (Classification of proteins structures)5B0H   
SuperfamilyO14960
Human Protein Atlas [tissue]ENSG00000145826-LECT2 [tissue]
Peptide AtlasO14960
HPRD04196
IPIIPI00024770   IPI00967580   IPI00967936   IPI00974360   
Protein Interaction databases
DIP (DOE-UCLA)O14960
IntAct (EBI)O14960
FunCoupENSG00000145826
BioGRIDLECT2
STRING (EMBL)LECT2
ZODIACLECT2
Ontologies - Pathways
QuickGOO14960
Ontology : AmiGOskeletal system development  protein binding  extracellular space  cytoplasm  chemotaxis  identical protein binding  metal ion binding  
Ontology : EGO-EBIskeletal system development  protein binding  extracellular space  cytoplasm  chemotaxis  identical protein binding  metal ion binding  
NDEx NetworkLECT2
Atlas of Cancer Signalling NetworkLECT2
Wikipedia pathwaysLECT2
Orthology - Evolution
OrthoDB3950
GeneTree (enSembl)ENSG00000145826
Phylogenetic Trees/Animal Genes : TreeFamLECT2
HOVERGENO14960
HOGENOMO14960
Homologs : HomoloGeneLECT2
Homology/Alignments : Family Browser (UCSC)LECT2
Gene fusions - Rearrangements
Tumor Fusion PortalLECT2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLECT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LECT2
dbVarLECT2
ClinVarLECT2
1000_GenomesLECT2 
Exome Variant ServerLECT2
ExAC (Exome Aggregation Consortium)ENSG00000145826
GNOMAD BrowserENSG00000145826
Genetic variants : HAPMAP3950
Genomic Variants (DGV)LECT2 [DGVbeta]
DECIPHERLECT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLECT2 
Mutations
ICGC Data PortalLECT2 
TCGA Data PortalLECT2 
Broad Tumor PortalLECT2
OASIS PortalLECT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLECT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLECT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LECT2
DgiDB (Drug Gene Interaction Database)LECT2
DoCM (Curated mutations)LECT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LECT2 (select a term)
intoGenLECT2
Cancer3DLECT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602882   
Orphanet
DisGeNETLECT2
MedgenLECT2
Genetic Testing Registry LECT2
NextProtO14960 [Medical]
TSGene3950
GENETestsLECT2
Target ValidationLECT2
Huge Navigator LECT2 [HugePedia]
snp3D : Map Gene to Disease3950
BioCentury BCIQLECT2
ClinGenLECT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3950
Chemical/Pharm GKB GenePA30330
Clinical trialLECT2
Miscellaneous
canSAR (ICR)LECT2 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLECT2
EVEXLECT2
GoPubMedLECT2
iHOPLECT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:19:41 CET 2017

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