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LEKR1 (leucine, glutamate and lysine rich 1)

Identity

Alias_symbol (synonym)FLJ16641
Other alias-
HGNC (Hugo) LEKR1
LocusID (NCBI) 389170
Atlas_Id 65225
Location 3q25.31  [Link to chromosome band 3q25]
Location_base_pair Starts at 156826307 and ends at 157046129 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LEKR1 (3q25.31) / BMP2K (4q21.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LEKR1   33765
Cards
Entrez_Gene (NCBI)LEKR1  389170  leucine, glutamate and lysine rich 1
Aliases
GeneCards (Weizmann)LEKR1
Ensembl hg19 (Hinxton)ENSG00000197980 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197980 [Gene_View]  chr3:156826307-157046129 [Contig_View]  LEKR1 [Vega]
ICGC DataPortalENSG00000197980
TCGA cBioPortalLEKR1
AceView (NCBI)LEKR1
Genatlas (Paris)LEKR1
WikiGenes389170
SOURCE (Princeton)LEKR1
Genetics Home Reference (NIH)LEKR1
Genomic and cartography
GoldenPath hg38 (UCSC)LEKR1  -     chr3:156826307-157046129 +  3q25.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LEKR1  -     3q25.31   [Description]    (hg19-Feb_2009)
EnsemblLEKR1 - 3q25.31 [CytoView hg19]  LEKR1 - 3q25.31 [CytoView hg38]
Mapping of homologs : NCBILEKR1 [Mapview hg19]  LEKR1 [Mapview hg38]
OMIM613536   
Gene and transcription
Genbank (Entrez)AK094480 AK131473 BC041967 DA075031
RefSeq transcript (Entrez)NM_001004316 NM_001193283
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LEKR1
Cluster EST : UnigeneHs.478048 [ NCBI ]
CGAP (NCI)Hs.478048
Alternative Splicing GalleryENSG00000197980
Gene ExpressionLEKR1 [ NCBI-GEO ]   LEKR1 [ EBI - ARRAY_EXPRESS ]   LEKR1 [ SEEK ]   LEKR1 [ MEM ]
Gene Expression Viewer (FireBrowse)LEKR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389170
GTEX Portal (Tissue expression)LEKR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMV7
Splice isoforms : SwissVarQ6ZMV7
PhosPhoSitePlusQ6ZMV7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LEKR1
DMDM Disease mutations389170
Blocks (Seattle)LEKR1
SuperfamilyQ6ZMV7
Human Protein AtlasENSG00000197980
Peptide AtlasQ6ZMV7
HPRD16915
IPIIPI01015428   IPI00442154   IPI00167719   IPI00793893   IPI00965855   IPI00940058   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMV7
IntAct (EBI)Q6ZMV7
FunCoupENSG00000197980
BioGRIDLEKR1
STRING (EMBL)LEKR1
ZODIACLEKR1
Ontologies - Pathways
QuickGOQ6ZMV7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLEKR1
Atlas of Cancer Signalling NetworkLEKR1
Wikipedia pathwaysLEKR1
Orthology - Evolution
OrthoDB389170
GeneTree (enSembl)ENSG00000197980
Phylogenetic Trees/Animal Genes : TreeFamLEKR1
HOVERGENQ6ZMV7
HOGENOMQ6ZMV7
Homologs : HomoloGeneLEKR1
Homology/Alignments : Family Browser (UCSC)LEKR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLEKR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LEKR1
dbVarLEKR1
ClinVarLEKR1
1000_GenomesLEKR1 
Exome Variant ServerLEKR1
ExAC (Exome Aggregation Consortium)LEKR1 (select the gene name)
Genetic variants : HAPMAP389170
Genomic Variants (DGV)LEKR1 [DGVbeta]
DECIPHERLEKR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLEKR1 
Mutations
ICGC Data PortalLEKR1 
TCGA Data PortalLEKR1 
Broad Tumor PortalLEKR1
OASIS PortalLEKR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLEKR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLEKR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LEKR1
DgiDB (Drug Gene Interaction Database)LEKR1
DoCM (Curated mutations)LEKR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LEKR1 (select a term)
intoGenLEKR1
Cancer3DLEKR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613536   
Orphanet
MedgenLEKR1
Genetic Testing Registry LEKR1
NextProtQ6ZMV7 [Medical]
TSGene389170
GENETestsLEKR1
Target ValidationLEKR1
Huge Navigator LEKR1 [HugePedia]
snp3D : Map Gene to Disease389170
BioCentury BCIQLEKR1
ClinGenLEKR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389170
Chemical/Pharm GKB GenePA162393851
Clinical trialLEKR1
Miscellaneous
canSAR (ICR)LEKR1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLEKR1
EVEXLEKR1
GoPubMedLEKR1
iHOPLEKR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:37 CEST 2017

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