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LENEP (lens epithelial protein)

Identity

Alias_symbol (synonym)LEP503
Other alias
HGNC (Hugo) LENEP
LocusID (NCBI) 55891
Atlas_Id 65228
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 154966062 and ends at 154966791 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LENEP   14429
Cards
Entrez_Gene (NCBI)LENEP  55891  lens epithelial protein
AliasesLEP503
GeneCards (Weizmann)LENEP
Ensembl hg19 (Hinxton)ENSG00000163352 [Gene_View]  chr1:154966062-154966791 [Contig_View]  LENEP [Vega]
Ensembl hg38 (Hinxton)ENSG00000163352 [Gene_View]  chr1:154966062-154966791 [Contig_View]  LENEP [Vega]
ICGC DataPortalENSG00000163352
TCGA cBioPortalLENEP
AceView (NCBI)LENEP
Genatlas (Paris)LENEP
WikiGenes55891
SOURCE (Princeton)LENEP
Genetics Home Reference (NIH)LENEP
Genomic and cartography
GoldenPath hg19 (UCSC)LENEP  -     chr1:154966062-154966791 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LENEP  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblLENEP - 1q21.3 [CytoView hg19]  LENEP - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBILENEP [Mapview hg19]  LENEP [Mapview hg38]
OMIM607377   
Gene and transcription
Genbank (Entrez)AB451457 AF268478 BC069140 BC096714 BC098148
RefSeq transcript (Entrez)NM_018655
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)LENEP
Cluster EST : UnigeneHs.272399 [ NCBI ]
CGAP (NCI)Hs.272399
Alternative Splicing GalleryENSG00000163352
Gene ExpressionLENEP [ NCBI-GEO ]   LENEP [ EBI - ARRAY_EXPRESS ]   LENEP [ SEEK ]   LENEP [ MEM ]
Gene Expression Viewer (FireBrowse)LENEP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55891
GTEX Portal (Tissue expression)LENEP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5L5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5L5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5L5
Splice isoforms : SwissVarQ9Y5L5
PhosPhoSitePlusQ9Y5L5
Domains : Interpro (EBI)LEP503   
Domain families : Pfam (Sanger)LEP503 (PF15221)   
Domain families : Pfam (NCBI)pfam15221   
Domain structure : Prodom (Prabi Lyon)PD336054 (PD336054)   
Conserved Domain (NCBI)LENEP
DMDM Disease mutations55891
Blocks (Seattle)LENEP
SuperfamilyQ9Y5L5
Human Protein AtlasENSG00000163352
Peptide AtlasQ9Y5L5
HPRD09569
IPIIPI00001590   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5L5
IntAct (EBI)Q9Y5L5
FunCoupENSG00000163352
BioGRIDLENEP
STRING (EMBL)LENEP
ZODIACLENEP
Ontologies - Pathways
QuickGOQ9Y5L5
Ontology : AmiGODNA binding  multicellular organismal development  
Ontology : EGO-EBIDNA binding  multicellular organismal development  
NDEx NetworkLENEP
Atlas of Cancer Signalling NetworkLENEP
Wikipedia pathwaysLENEP
Orthology - Evolution
OrthoDB55891
GeneTree (enSembl)ENSG00000163352
Phylogenetic Trees/Animal Genes : TreeFamLENEP
HOVERGENQ9Y5L5
HOGENOMQ9Y5L5
Homologs : HomoloGeneLENEP
Homology/Alignments : Family Browser (UCSC)LENEP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLENEP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LENEP
dbVarLENEP
ClinVarLENEP
1000_GenomesLENEP 
Exome Variant ServerLENEP
ExAC (Exome Aggregation Consortium)LENEP (select the gene name)
Genetic variants : HAPMAP55891
Genomic Variants (DGV)LENEP [DGVbeta]
DECIPHER (Syndromes)1:154966062-154966791  ENSG00000163352
CONAN: Copy Number AnalysisLENEP 
Mutations
ICGC Data PortalLENEP 
TCGA Data PortalLENEP 
Broad Tumor PortalLENEP
OASIS PortalLENEP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLENEP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLENEP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LENEP
DgiDB (Drug Gene Interaction Database)LENEP
DoCM (Curated mutations)LENEP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LENEP (select a term)
intoGenLENEP
Cancer3DLENEP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607377   
Orphanet
MedgenLENEP
Genetic Testing Registry LENEP
NextProtQ9Y5L5 [Medical]
TSGene55891
GENETestsLENEP
Huge Navigator LENEP [HugePedia]
snp3D : Map Gene to Disease55891
BioCentury BCIQLENEP
ClinGenLENEP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55891
Chemical/Pharm GKB GenePA30333
Clinical trialLENEP
Miscellaneous
canSAR (ICR)LENEP (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLENEP
EVEXLENEP
GoPubMedLENEP
iHOPLENEP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:10:57 CET 2017

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