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LEPROTL1 (leptin receptor overlapping transcript like 1)

Identity

Alias (NCBI)HSPC112
Vps55
my047
HGNC (Hugo) LEPROTL1
HGNC Alias symbmy047
Vps55
HGNC Alias nameendospanin-2
LocusID (NCBI) 23484
Atlas_Id 58379
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 30095408 and ends at 30108524 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NCOA2 (8q13.3)::LEPROTL1 (8p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LEPROTL1   6555
Cards
Entrez_Gene (NCBI)LEPROTL1    leptin receptor overlapping transcript like 1
AliasesHSPC112; Vps55; my047
GeneCards (Weizmann)LEPROTL1
Ensembl hg19 (Hinxton)ENSG00000104660 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104660 [Gene_View]  ENSG00000104660 [Sequence]  chr8:30095408-30108524 [Contig_View]  LEPROTL1 [Vega]
ICGC DataPortalENSG00000104660
TCGA cBioPortalLEPROTL1
AceView (NCBI)LEPROTL1
Genatlas (Paris)LEPROTL1
SOURCE (Princeton)LEPROTL1
Genetics Home Reference (NIH)LEPROTL1
Genomic and cartography
GoldenPath hg38 (UCSC)LEPROTL1  -     chr8:30095408-30108524 +  8p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LEPROTL1  -     8p12   [Description]    (hg19-Feb_2009)
GoldenPathLEPROTL1 - 8p12 [CytoView hg19]  LEPROTL1 - 8p12 [CytoView hg38]
ImmunoBaseENSG00000104660
Genome Data Viewer NCBILEPROTL1 [Mapview hg19]  
OMIM607338   
Gene and transcription
Genbank (Entrez)AF063605 AF161461 AK075363 AY277595 AY358674
RefSeq transcript (Entrez)NM_001128208 NM_015344
Consensus coding sequences : CCDS (NCBI)LEPROTL1
Gene ExpressionLEPROTL1 [ NCBI-GEO ]   LEPROTL1 [ EBI - ARRAY_EXPRESS ]   LEPROTL1 [ SEEK ]   LEPROTL1 [ MEM ]
Gene Expression Viewer (FireBrowse)LEPROTL1 [ Firebrowse - Broad ]
GenevisibleExpression of LEPROTL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23484
GTEX Portal (Tissue expression)LEPROTL1
Human Protein AtlasENSG00000104660-LEPROTL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95214   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95214  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95214
PhosPhoSitePlusO95214
Domains : Interpro (EBI)Vps55/LEPROT   
Domain families : Pfam (Sanger)Vps55 (PF04133)   
Domain families : Pfam (NCBI)pfam04133   
Conserved Domain (NCBI)LEPROTL1
SuperfamilyO95214
AlphaFold pdb e-kbO95214   
Human Protein Atlas [tissue]ENSG00000104660-LEPROTL1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O95214
IntAct (EBI)O95214
BioGRIDLEPROTL1
STRING (EMBL)LEPROTL1
ZODIACLEPROTL1
Ontologies - Pathways
QuickGOO95214
Ontology : AmiGOprotein binding  endosome  integral component of membrane  late endosome to vacuole transport via multivesicular body sorting pathway  identical protein binding  negative regulation of protein localization to cell surface  
Ontology : EGO-EBIprotein binding  endosome  integral component of membrane  late endosome to vacuole transport via multivesicular body sorting pathway  identical protein binding  negative regulation of protein localization to cell surface  
NDEx NetworkLEPROTL1
Atlas of Cancer Signalling NetworkLEPROTL1
Wikipedia pathwaysLEPROTL1
Orthology - Evolution
OrthoDB23484
GeneTree (enSembl)ENSG00000104660
Phylogenetic Trees/Animal Genes : TreeFamLEPROTL1
Homologs : HomoloGeneLEPROTL1
Homology/Alignments : Family Browser (UCSC)LEPROTL1
Gene fusions - Rearrangements
Fusion : QuiverLEPROTL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLEPROTL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LEPROTL1
dbVarLEPROTL1
ClinVarLEPROTL1
MonarchLEPROTL1
1000_GenomesLEPROTL1 
Exome Variant ServerLEPROTL1
GNOMAD BrowserENSG00000104660
Varsome BrowserLEPROTL1
ACMGLEPROTL1 variants
VarityO95214
Genomic Variants (DGV)LEPROTL1 [DGVbeta]
DECIPHERLEPROTL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLEPROTL1 
Mutations
ICGC Data PortalLEPROTL1 
TCGA Data PortalLEPROTL1 
Broad Tumor PortalLEPROTL1
OASIS PortalLEPROTL1 [ Somatic mutations - Copy number]
Cancer Gene: CensusLEPROTL1 
Somatic Mutations in Cancer : COSMICLEPROTL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLEPROTL1
Mutations and Diseases : HGMDLEPROTL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLEPROTL1
DgiDB (Drug Gene Interaction Database)LEPROTL1
DoCM (Curated mutations)LEPROTL1
CIViC (Clinical Interpretations of Variants in Cancer)LEPROTL1
Cancer3DLEPROTL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607338   
Orphanet
DisGeNETLEPROTL1
MedgenLEPROTL1
Genetic Testing Registry LEPROTL1
NextProtO95214 [Medical]
GENETestsLEPROTL1
Target ValidationLEPROTL1
Huge Navigator LEPROTL1 [HugePedia]
ClinGenLEPROTL1
Clinical trials, drugs, therapy
MyCancerGenomeLEPROTL1
Protein Interactions : CTDLEPROTL1
PharosO95214
Clinical trialLEPROTL1
Miscellaneous
canSAR (ICR)LEPROTL1
HarmonizomeLEPROTL1
ARCHS4LEPROTL1
DataMed IndexLEPROTL1
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLEPROTL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sun Jan 16 18:17:33 CET 2022

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