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LEPROTL1 (leptin receptor overlapping transcript-like 1)

Identity

Alias_symbol (synonym)my047
Vps55
Other aliasHSPC112
HGNC (Hugo) LEPROTL1
LocusID (NCBI) 23484
Atlas_Id 65235
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 30095406 and ends at 30137706 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NCOA2 (8q13.3) / LEPROTL1 (8p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LEPROTL1   6555
Cards
Entrez_Gene (NCBI)LEPROTL1  23484  leptin receptor overlapping transcript-like 1
AliasesHSPC112; Vps55; my047
GeneCards (Weizmann)LEPROTL1
Ensembl hg19 (Hinxton)ENSG00000104660 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104660 [Gene_View]  chr8:30095406-30137706 [Contig_View]  LEPROTL1 [Vega]
ICGC DataPortalENSG00000104660
TCGA cBioPortalLEPROTL1
AceView (NCBI)LEPROTL1
Genatlas (Paris)LEPROTL1
WikiGenes23484
SOURCE (Princeton)LEPROTL1
Genetics Home Reference (NIH)LEPROTL1
Genomic and cartography
GoldenPath hg38 (UCSC)LEPROTL1  -     chr8:30095406-30137706 +  8p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LEPROTL1  -     8p12   [Description]    (hg19-Feb_2009)
EnsemblLEPROTL1 - 8p12 [CytoView hg19]  LEPROTL1 - 8p12 [CytoView hg38]
Mapping of homologs : NCBILEPROTL1 [Mapview hg19]  LEPROTL1 [Mapview hg38]
OMIM607338   
Gene and transcription
Genbank (Entrez)AF063605 AF161461 AK075363 AY277595 AY358674
RefSeq transcript (Entrez)NM_001128208 NM_015344
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LEPROTL1
Cluster EST : UnigeneHs.146585 [ NCBI ]
CGAP (NCI)Hs.146585
Alternative Splicing GalleryENSG00000104660
Gene ExpressionLEPROTL1 [ NCBI-GEO ]   LEPROTL1 [ EBI - ARRAY_EXPRESS ]   LEPROTL1 [ SEEK ]   LEPROTL1 [ MEM ]
Gene Expression Viewer (FireBrowse)LEPROTL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23484
GTEX Portal (Tissue expression)LEPROTL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95214   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95214  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95214
Splice isoforms : SwissVarO95214
PhosPhoSitePlusO95214
Domains : Interpro (EBI)VPS55   
Domain families : Pfam (Sanger)Vps55 (PF04133)   
Domain families : Pfam (NCBI)pfam04133   
Conserved Domain (NCBI)LEPROTL1
DMDM Disease mutations23484
Blocks (Seattle)LEPROTL1
SuperfamilyO95214
Human Protein AtlasENSG00000104660
Peptide AtlasO95214
HPRD09551
IPIIPI00981526   IPI00383171   IPI00790750   IPI00981190   IPI00974305   IPI00797341   IPI00029397   IPI00982390   IPI00974007   
Protein Interaction databases
DIP (DOE-UCLA)O95214
IntAct (EBI)O95214
FunCoupENSG00000104660
BioGRIDLEPROTL1
STRING (EMBL)LEPROTL1
ZODIACLEPROTL1
Ontologies - Pathways
QuickGOO95214
Ontology : AmiGOprotein binding  endosome  integral component of membrane  late endosome to vacuole transport via multivesicular body sorting pathway  negative regulation of protein localization to cell surface  
Ontology : EGO-EBIprotein binding  endosome  integral component of membrane  late endosome to vacuole transport via multivesicular body sorting pathway  negative regulation of protein localization to cell surface  
NDEx NetworkLEPROTL1
Atlas of Cancer Signalling NetworkLEPROTL1
Wikipedia pathwaysLEPROTL1
Orthology - Evolution
OrthoDB23484
GeneTree (enSembl)ENSG00000104660
Phylogenetic Trees/Animal Genes : TreeFamLEPROTL1
HOVERGENO95214
HOGENOMO95214
Homologs : HomoloGeneLEPROTL1
Homology/Alignments : Family Browser (UCSC)LEPROTL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLEPROTL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LEPROTL1
dbVarLEPROTL1
ClinVarLEPROTL1
1000_GenomesLEPROTL1 
Exome Variant ServerLEPROTL1
ExAC (Exome Aggregation Consortium)LEPROTL1 (select the gene name)
Genetic variants : HAPMAP23484
Genomic Variants (DGV)LEPROTL1 [DGVbeta]
DECIPHERLEPROTL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLEPROTL1 
Mutations
ICGC Data PortalLEPROTL1 
TCGA Data PortalLEPROTL1 
Broad Tumor PortalLEPROTL1
OASIS PortalLEPROTL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLEPROTL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLEPROTL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LEPROTL1
DgiDB (Drug Gene Interaction Database)LEPROTL1
DoCM (Curated mutations)LEPROTL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LEPROTL1 (select a term)
intoGenLEPROTL1
Cancer3DLEPROTL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607338   
Orphanet
MedgenLEPROTL1
Genetic Testing Registry LEPROTL1
NextProtO95214 [Medical]
TSGene23484
GENETestsLEPROTL1
Target ValidationLEPROTL1
Huge Navigator LEPROTL1 [HugePedia]
snp3D : Map Gene to Disease23484
BioCentury BCIQLEPROTL1
ClinGenLEPROTL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23484
Chemical/Pharm GKB GenePA30334
Clinical trialLEPROTL1
Miscellaneous
canSAR (ICR)LEPROTL1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLEPROTL1
EVEXLEPROTL1
GoPubMedLEPROTL1
iHOPLEPROTL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:46 CEST 2017

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