Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LEUTX (leucine twenty homeobox)

Identity

Other alias-
HGNC (Hugo) LEUTX
LocusID (NCBI) 342900
Atlas_Id 78368
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39776594 and ends at 39786135 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EXOSC5 (19q13.2) / LEUTX (19q13.2)KAT6A (8p11.21) / LEUTX (19q13.2)NOVA2 (19q13.32) / LEUTX (19q13.2)
PAK4 (19q13.2) / LEUTX (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LEUTX   31953
Cards
Entrez_Gene (NCBI)LEUTX  342900  leucine twenty homeobox
Aliases
GeneCards (Weizmann)LEUTX
Ensembl hg19 (Hinxton)ENSG00000213921 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213921 [Gene_View]  chr19:39776594-39786135 [Contig_View]  LEUTX [Vega]
ICGC DataPortalENSG00000213921
TCGA cBioPortalLEUTX
AceView (NCBI)LEUTX
Genatlas (Paris)LEUTX
WikiGenes342900
SOURCE (Princeton)LEUTX
Genetics Home Reference (NIH)LEUTX
Genomic and cartography
GoldenPath hg38 (UCSC)LEUTX  -     chr19:39776594-39786135 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LEUTX  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblLEUTX - 19q13.2 [CytoView hg19]  LEUTX - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBILEUTX [Mapview hg19]  LEUTX [Mapview hg38]
Gene and transcription
Genbank (Entrez)CR746510
RefSeq transcript (Entrez)NM_001143832
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LEUTX
Cluster EST : UnigeneHs.451638 [ NCBI ]
CGAP (NCI)Hs.451638
Alternative Splicing GalleryENSG00000213921
Gene ExpressionLEUTX [ NCBI-GEO ]   LEUTX [ EBI - ARRAY_EXPRESS ]   LEUTX [ SEEK ]   LEUTX [ MEM ]
Gene Expression Viewer (FireBrowse)LEUTX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342900
GTEX Portal (Tissue expression)LEUTX
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MZ59   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MZ59  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MZ59
Splice isoforms : SwissVarA8MZ59
PhosPhoSitePlusA8MZ59
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Conserved Domain (NCBI)LEUTX
DMDM Disease mutations342900
Blocks (Seattle)LEUTX
SuperfamilyA8MZ59
Human Protein AtlasENSG00000213921
Peptide AtlasA8MZ59
IPIIPI00736822   IPI01025992   
Protein Interaction databases
DIP (DOE-UCLA)A8MZ59
IntAct (EBI)A8MZ59
FunCoupENSG00000213921
BioGRIDLEUTX
STRING (EMBL)LEUTX
ZODIACLEUTX
Ontologies - Pathways
QuickGOA8MZ59
Ontology : AmiGOnucleus  regulation of transcription, DNA-templated  sequence-specific DNA binding  
Ontology : EGO-EBInucleus  regulation of transcription, DNA-templated  sequence-specific DNA binding  
NDEx NetworkLEUTX
Atlas of Cancer Signalling NetworkLEUTX
Wikipedia pathwaysLEUTX
Orthology - Evolution
OrthoDB342900
GeneTree (enSembl)ENSG00000213921
Phylogenetic Trees/Animal Genes : TreeFamLEUTX
HOVERGENA8MZ59
HOGENOMA8MZ59
Homologs : HomoloGeneLEUTX
Homology/Alignments : Family Browser (UCSC)LEUTX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLEUTX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LEUTX
dbVarLEUTX
ClinVarLEUTX
1000_GenomesLEUTX 
Exome Variant ServerLEUTX
ExAC (Exome Aggregation Consortium)LEUTX (select the gene name)
Genetic variants : HAPMAP342900
Genomic Variants (DGV)LEUTX [DGVbeta]
DECIPHERLEUTX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLEUTX 
Mutations
ICGC Data PortalLEUTX 
TCGA Data PortalLEUTX 
Broad Tumor PortalLEUTX
OASIS PortalLEUTX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLEUTX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLEUTX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LEUTX
DgiDB (Drug Gene Interaction Database)LEUTX
DoCM (Curated mutations)LEUTX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LEUTX (select a term)
intoGenLEUTX
Cancer3DLEUTX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLEUTX
Genetic Testing Registry LEUTX
NextProtA8MZ59 [Medical]
TSGene342900
GENETestsLEUTX
Target ValidationLEUTX
Huge Navigator LEUTX [HugePedia]
snp3D : Map Gene to Disease342900
BioCentury BCIQLEUTX
ClinGenLEUTX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342900
Chemical/Pharm GKB GenePA162393884
Clinical trialLEUTX
Miscellaneous
canSAR (ICR)LEUTX (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLEUTX
EVEXLEUTX
GoPubMedLEUTX
iHOPLEUTX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:39 CEST 2017

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