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LEXM (lymphocyte expansion molecule)

Identity

Alias_namesC1orf177
chromosome 1 open reading frame 177
Alias_symbol (synonym)FLJ40201
LEM
Other alias
HGNC (Hugo) LEXM
LocusID (NCBI) 163747
Atlas_Id 56431
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 55271736 and ends at 55307937 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ST5 (11p15.4) / LEXM (1p32.3)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LEXM   26854
Cards
Entrez_Gene (NCBI)LEXM  163747  lymphocyte expansion molecule
AliasesC1orf177; LEM
GeneCards (Weizmann)LEXM
Ensembl hg19 (Hinxton)ENSG00000162398 [Gene_View]  chr1:55271736-55307937 [Contig_View]  LEXM [Vega]
Ensembl hg38 (Hinxton)ENSG00000162398 [Gene_View]  chr1:55271736-55307937 [Contig_View]  LEXM [Vega]
ICGC DataPortalENSG00000162398
TCGA cBioPortalLEXM
AceView (NCBI)LEXM
Genatlas (Paris)LEXM
WikiGenes163747
SOURCE (Princeton)LEXM
Genetics Home Reference (NIH)LEXM
Genomic and cartography
GoldenPath hg19 (UCSC)LEXM  -     chr1:55271736-55307937 +  1p32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LEXM  -     1p32.3   [Description]    (hg38-Dec_2013)
EnsemblLEXM - 1p32.3 [CytoView hg19]  LEXM - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBILEXM [Mapview hg19]  LEXM [Mapview hg38]
OMIM616446   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001110533 NM_152607
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LEXM
Cluster EST : UnigeneHs.376018 [ NCBI ]
CGAP (NCI)Hs.376018
Alternative Splicing GalleryENSG00000162398
Gene ExpressionLEXM [ NCBI-GEO ]   LEXM [ EBI - ARRAY_EXPRESS ]   LEXM [ SEEK ]   LEXM [ MEM ]
Gene Expression Viewer (FireBrowse)LEXM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163747
GTEX Portal (Tissue expression)LEXM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3ZCV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3ZCV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3ZCV2
Splice isoforms : SwissVarQ3ZCV2
PhosPhoSitePlusQ3ZCV2
Domains : Interpro (EBI)LEXM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LEXM
DMDM Disease mutations163747
Blocks (Seattle)LEXM
SuperfamilyQ3ZCV2
Human Protein AtlasENSG00000162398
Peptide AtlasQ3ZCV2
HPRD08807
IPIIPI00641366   IPI00167399   
Protein Interaction databases
DIP (DOE-UCLA)Q3ZCV2
IntAct (EBI)Q3ZCV2
FunCoupENSG00000162398
BioGRIDLEXM
STRING (EMBL)LEXM
ZODIACLEXM
Ontologies - Pathways
QuickGOQ3ZCV2
Ontology : AmiGOmitochondrion  mitochondrial ribosome  positive regulation of cell proliferation  CD8-positive, alpha-beta T cell proliferation  positive regulation of oxidative phosphorylation  
Ontology : EGO-EBImitochondrion  mitochondrial ribosome  positive regulation of cell proliferation  CD8-positive, alpha-beta T cell proliferation  positive regulation of oxidative phosphorylation  
NDEx NetworkLEXM
Atlas of Cancer Signalling NetworkLEXM
Wikipedia pathwaysLEXM
Orthology - Evolution
OrthoDB163747
GeneTree (enSembl)ENSG00000162398
Phylogenetic Trees/Animal Genes : TreeFamLEXM
HOVERGENQ3ZCV2
HOGENOMQ3ZCV2
Homologs : HomoloGeneLEXM
Homology/Alignments : Family Browser (UCSC)LEXM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLEXM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LEXM
dbVarLEXM
ClinVarLEXM
1000_GenomesLEXM 
Exome Variant ServerLEXM
ExAC (Exome Aggregation Consortium)LEXM (select the gene name)
Genetic variants : HAPMAP163747
Genomic Variants (DGV)LEXM [DGVbeta]
DECIPHER (Syndromes)1:55271736-55307937  ENSG00000162398
CONAN: Copy Number AnalysisLEXM 
Mutations
ICGC Data PortalLEXM 
TCGA Data PortalLEXM 
Broad Tumor PortalLEXM
OASIS PortalLEXM [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLEXM
BioMutasearch LEXM
DgiDB (Drug Gene Interaction Database)LEXM
DoCM (Curated mutations)LEXM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LEXM (select a term)
intoGenLEXM
Cancer3DLEXM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616446   
Orphanet
MedgenLEXM
Genetic Testing Registry LEXM
NextProtQ3ZCV2 [Medical]
TSGene163747
GENETestsLEXM
Huge Navigator LEXM [HugePedia]
snp3D : Map Gene to Disease163747
BioCentury BCIQLEXM
ClinGenLEXM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163747
Chemical/Pharm GKB GenePA142672425
Clinical trialLEXM
Miscellaneous
canSAR (ICR)LEXM (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLEXM
EVEXLEXM
GoPubMedLEXM
iHOPLEXM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:12:41 CET 2017

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