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LFNG (LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase)

Identity

Alias_nameslunatic fringe (Drosophila) homolog
lunatic fringe homolog (Drosophila)
Alias_symbol (synonym)SCDO3
Other alias
HGNC (Hugo) LFNG
LocusID (NCBI) 3955
Atlas_Id 52840
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 2559479 and ends at 2568063 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PRPSAP2 (17p11.2) / LFNG (7p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LFNG   6560
Cards
Entrez_Gene (NCBI)LFNG  3955  LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
AliasesSCDO3
GeneCards (Weizmann)LFNG
Ensembl hg19 (Hinxton)ENSG00000106003 [Gene_View]  chr7:2559479-2568063 [Contig_View]  LFNG [Vega]
Ensembl hg38 (Hinxton)ENSG00000106003 [Gene_View]  chr7:2559479-2568063 [Contig_View]  LFNG [Vega]
ICGC DataPortalENSG00000106003
TCGA cBioPortalLFNG
AceView (NCBI)LFNG
Genatlas (Paris)LFNG
WikiGenes3955
SOURCE (Princeton)LFNG
Genetics Home Reference (NIH)LFNG
Genomic and cartography
GoldenPath hg19 (UCSC)LFNG  -     chr7:2559479-2568063 +  7p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LFNG  -     7p22.3   [Description]    (hg38-Dec_2013)
EnsemblLFNG - 7p22.3 [CytoView hg19]  LFNG - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBILFNG [Mapview hg19]  LFNG [Mapview hg38]
OMIM602576   609813   
Gene and transcription
Genbank (Entrez)AF193612 AK096284 BC014851 BM854210 U94354
RefSeq transcript (Entrez)NM_001040167 NM_001040168 NM_001166355 NM_002304
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_008109 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)LFNG
Cluster EST : UnigeneHs.159142 [ NCBI ]
CGAP (NCI)Hs.159142
Alternative Splicing GalleryENSG00000106003
Gene ExpressionLFNG [ NCBI-GEO ]   LFNG [ EBI - ARRAY_EXPRESS ]   LFNG [ SEEK ]   LFNG [ MEM ]
Gene Expression Viewer (FireBrowse)LFNG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3955
GTEX Portal (Tissue expression)LFNG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NES3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NES3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NES3
Splice isoforms : SwissVarQ8NES3
Catalytic activity : Enzyme2.4.1.222 [ Enzyme-Expasy ]   2.4.1.2222.4.1.222 [ IntEnz-EBI ]   2.4.1.222 [ BRENDA ]   2.4.1.222 [ KEGG ]   
PhosPhoSitePlusQ8NES3
Domains : Interpro (EBI)Fringe    Fringe-like   
Domain families : Pfam (Sanger)Fringe (PF02434)   
Domain families : Pfam (NCBI)pfam02434   
Conserved Domain (NCBI)LFNG
DMDM Disease mutations3955
Blocks (Seattle)LFNG
SuperfamilyQ8NES3
Human Protein AtlasENSG00000106003
Peptide AtlasQ8NES3
IPIIPI00455739   IPI00219477   IPI00472104   IPI00892667   
Protein Interaction databases
DIP (DOE-UCLA)Q8NES3
IntAct (EBI)Q8NES3
FunCoupENSG00000106003
BioGRIDLFNG
STRING (EMBL)LFNG
ZODIACLFNG
Ontologies - Pathways
QuickGOQ8NES3
Ontology : AmiGOovarian follicle development  somitogenesis  marginal zone B cell differentiation  molecular_function  extracellular region  female meiotic division  compartment pattern specification  metabolic process  regulation of Notch signaling pathway  organ morphogenesis  regulation of somitogenesis  integral component of Golgi membrane  T cell differentiation  positive regulation of protein binding  O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity  positive regulation of Notch signaling pathway  metal ion binding  negative regulation of Notch signaling pathway involved in somitogenesis  extracellular vesicle  
Ontology : EGO-EBIovarian follicle development  somitogenesis  marginal zone B cell differentiation  molecular_function  extracellular region  female meiotic division  compartment pattern specification  metabolic process  regulation of Notch signaling pathway  organ morphogenesis  regulation of somitogenesis  integral component of Golgi membrane  T cell differentiation  positive regulation of protein binding  O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity  positive regulation of Notch signaling pathway  metal ion binding  negative regulation of Notch signaling pathway involved in somitogenesis  extracellular vesicle  
Pathways : KEGGOther types of O-glycan biosynthesis    Notch signaling pathway   
NDEx NetworkLFNG
Atlas of Cancer Signalling NetworkLFNG
Wikipedia pathwaysLFNG
Orthology - Evolution
OrthoDB3955
GeneTree (enSembl)ENSG00000106003
Phylogenetic Trees/Animal Genes : TreeFamLFNG
HOVERGENQ8NES3
HOGENOMQ8NES3
Homologs : HomoloGeneLFNG
Homology/Alignments : Family Browser (UCSC)LFNG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLFNG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LFNG
dbVarLFNG
ClinVarLFNG
1000_GenomesLFNG 
Exome Variant ServerLFNG
ExAC (Exome Aggregation Consortium)LFNG (select the gene name)
Genetic variants : HAPMAP3955
Genomic Variants (DGV)LFNG [DGVbeta]
DECIPHER (Syndromes)7:2559479-2568063  ENSG00000106003
CONAN: Copy Number AnalysisLFNG 
Mutations
ICGC Data PortalLFNG 
TCGA Data PortalLFNG 
Broad Tumor PortalLFNG
OASIS PortalLFNG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLFNG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLFNG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LFNG
DgiDB (Drug Gene Interaction Database)LFNG
DoCM (Curated mutations)LFNG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LFNG (select a term)
intoGenLFNG
Cancer3DLFNG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602576    609813   
Orphanet1042   
MedgenLFNG
Genetic Testing Registry LFNG
NextProtQ8NES3 [Medical]
TSGene3955
GENETestsLFNG
Huge Navigator LFNG [HugePedia]
snp3D : Map Gene to Disease3955
BioCentury BCIQLFNG
ClinGenLFNG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3955
Chemical/Pharm GKB GenePA30336
Clinical trialLFNG
Miscellaneous
canSAR (ICR)LFNG (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLFNG
EVEXLFNG
GoPubMedLFNG
iHOPLFNG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:12:42 CET 2017

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