Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LGALS16 (galectin 16)

Identity

Alias_nameslectin, galactoside-binding, soluble, 16
Other alias-
HGNC (Hugo) LGALS16
LocusID (NCBI) 148003
Atlas_Id 65238
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39655894 and ends at 39660647 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LGALS16   40039
Cards
Entrez_Gene (NCBI)LGALS16  148003  galectin 16
Aliases
GeneCards (Weizmann)LGALS16
Ensembl hg19 (Hinxton)ENSG00000249861 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249861 [Gene_View]  chr19:39655894-39660647 [Contig_View]  LGALS16 [Vega]
ICGC DataPortalENSG00000249861
TCGA cBioPortalLGALS16
AceView (NCBI)LGALS16
Genatlas (Paris)LGALS16
WikiGenes148003
SOURCE (Princeton)LGALS16
Genetics Home Reference (NIH)LGALS16
Genomic and cartography
GoldenPath hg38 (UCSC)LGALS16  -     chr19:39655894-39660647 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LGALS16  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblLGALS16 - 19q13.2 [CytoView hg19]  LGALS16 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBILGALS16 [Mapview hg19]  LGALS16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX095861 FJ613352
RefSeq transcript (Entrez)NM_001190441
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LGALS16
Cluster EST : UnigeneHs.667238 [ NCBI ]
CGAP (NCI)Hs.667238
Alternative Splicing GalleryENSG00000249861
Gene ExpressionLGALS16 [ NCBI-GEO ]   LGALS16 [ EBI - ARRAY_EXPRESS ]   LGALS16 [ SEEK ]   LGALS16 [ MEM ]
Gene Expression Viewer (FireBrowse)LGALS16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148003
GTEX Portal (Tissue expression)LGALS16
Human Protein AtlasENSG00000249861-LGALS16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MUM7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MUM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MUM7
Splice isoforms : SwissVarA8MUM7
PhosPhoSitePlusA8MUM7
Domaine pattern : Prosite (Expaxy)GALECTIN (PS51304)   
Domains : Interpro (EBI)ConA-like_dom    Galectin_16    Galectin_CRD   
Domain families : Pfam (Sanger)Gal-bind_lectin (PF00337)   
Domain families : Pfam (NCBI)pfam00337   
Domain families : Smart (EMBL)Gal-bind_lectin (SM00908)  GLECT (SM00276)  
Conserved Domain (NCBI)LGALS16
DMDM Disease mutations148003
Blocks (Seattle)LGALS16
SuperfamilyA8MUM7
Human Protein Atlas [tissue]ENSG00000249861-LGALS16 [tissue]
Peptide AtlasA8MUM7
IPIIPI00053329   
Protein Interaction databases
DIP (DOE-UCLA)A8MUM7
IntAct (EBI)A8MUM7
FunCoupENSG00000249861
BioGRIDLGALS16
STRING (EMBL)LGALS16
ZODIACLGALS16
Ontologies - Pathways
QuickGOA8MUM7
Ontology : AmiGOcellular_component  apoptotic process  lactose binding  positive regulation of T cell apoptotic process  
Ontology : EGO-EBIcellular_component  apoptotic process  lactose binding  positive regulation of T cell apoptotic process  
NDEx NetworkLGALS16
Atlas of Cancer Signalling NetworkLGALS16
Wikipedia pathwaysLGALS16
Orthology - Evolution
OrthoDB148003
GeneTree (enSembl)ENSG00000249861
Phylogenetic Trees/Animal Genes : TreeFamLGALS16
HOVERGENA8MUM7
HOGENOMA8MUM7
Homologs : HomoloGeneLGALS16
Homology/Alignments : Family Browser (UCSC)LGALS16
Gene fusions - Rearrangements
Tumor Fusion PortalLGALS16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLGALS16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LGALS16
dbVarLGALS16
ClinVarLGALS16
1000_GenomesLGALS16 
Exome Variant ServerLGALS16
ExAC (Exome Aggregation Consortium)ENSG00000249861
GNOMAD BrowserENSG00000249861
Genetic variants : HAPMAP148003
Genomic Variants (DGV)LGALS16 [DGVbeta]
DECIPHERLGALS16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLGALS16 
Mutations
ICGC Data PortalLGALS16 
TCGA Data PortalLGALS16 
Broad Tumor PortalLGALS16
OASIS PortalLGALS16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLGALS16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLGALS16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LGALS16
DgiDB (Drug Gene Interaction Database)LGALS16
DoCM (Curated mutations)LGALS16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LGALS16 (select a term)
intoGenLGALS16
Cancer3DLGALS16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLGALS16
MedgenLGALS16
Genetic Testing Registry LGALS16
NextProtA8MUM7 [Medical]
TSGene148003
GENETestsLGALS16
Target ValidationLGALS16
Huge Navigator LGALS16 [HugePedia]
snp3D : Map Gene to Disease148003
BioCentury BCIQLGALS16
ClinGenLGALS16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148003
Chemical/Pharm GKB GenePA166049059
Clinical trialLGALS16
Miscellaneous
canSAR (ICR)LGALS16 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLGALS16
EVEXLGALS16
GoPubMedLGALS16
iHOPLGALS16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:38:50 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.