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LGALS4 (galectin 4)

Identity

Alias_nameslectin
Alias_symbol (synonym)GAL4
Other aliasL36LBP
HGNC (Hugo) LGALS4
LocusID (NCBI) 3960
Atlas_Id 41144
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 38801671 and ends at 38813100 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARHGEF10L (1p36.13) / LGALS4 (19q13.2)LGALS4 (19q13.2) / ARHGEF10L (1p36.13)LGALS4 (19q13.2) / ASXL2 (2p23.3)
LGALS4 (19q13.2) / COLQ (3p25.1)LGALS4 (19q13.2) / CREBBP (16p13.3)LGALS4 (19q13.2) / EPC1 (10p11.22)
LGALS4 (19q13.2) / MUC1 (1q22)LGALS4 (19q13.2) / NFYA (6p21.1)LGALS4 (19q13.2) / RELA (11q13.1)
LGALS4 (19q13.2) / TP53 (17p13.1)MUC1 (1q22) / LGALS4 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LGALS4   6565
Cards
Entrez_Gene (NCBI)LGALS4  3960  galectin 4
AliasesGAL4; L36LBP
GeneCards (Weizmann)LGALS4
Ensembl hg19 (Hinxton)ENSG00000171747 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171747 [Gene_View]  chr19:38801671-38813100 [Contig_View]  LGALS4 [Vega]
ICGC DataPortalENSG00000171747
TCGA cBioPortalLGALS4
AceView (NCBI)LGALS4
Genatlas (Paris)LGALS4
WikiGenes3960
SOURCE (Princeton)LGALS4
Genetics Home Reference (NIH)LGALS4
Genomic and cartography
GoldenPath hg38 (UCSC)LGALS4  -     chr19:38801671-38813100 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LGALS4  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblLGALS4 - 19q13.2 [CytoView hg19]  LGALS4 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBILGALS4 [Mapview hg19]  LGALS4 [Mapview hg38]
OMIM602518   
Gene and transcription
Genbank (Entrez)AA130458 AA583424 AB006781 AF014838 AK290269
RefSeq transcript (Entrez)NM_006149
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LGALS4
Cluster EST : UnigeneHs.5302 [ NCBI ]
CGAP (NCI)Hs.5302
Alternative Splicing GalleryENSG00000171747
Gene ExpressionLGALS4 [ NCBI-GEO ]   LGALS4 [ EBI - ARRAY_EXPRESS ]   LGALS4 [ SEEK ]   LGALS4 [ MEM ]
Gene Expression Viewer (FireBrowse)LGALS4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3960
GTEX Portal (Tissue expression)LGALS4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56470   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56470  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56470
Splice isoforms : SwissVarP56470
PhosPhoSitePlusP56470
Domaine pattern : Prosite (Expaxy)GALECTIN (PS51304)   
Domains : Interpro (EBI)ConA-like_dom    Galectin4/6    Galectin_CRD   
Domain families : Pfam (Sanger)Gal-bind_lectin (PF00337)   
Domain families : Pfam (NCBI)pfam00337   
Domain families : Smart (EMBL)Gal-bind_lectin (SM00908)  GLECT (SM00276)  
Conserved Domain (NCBI)LGALS4
DMDM Disease mutations3960
Blocks (Seattle)LGALS4
PDB (SRS)1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
PDB (PDBSum)1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
PDB (IMB)1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
PDB (RSDB)1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
Structural Biology KnowledgeBase1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
SCOP (Structural Classification of Proteins)1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
CATH (Classification of proteins structures)1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
SuperfamilyP56470
Human Protein AtlasENSG00000171747
Peptide AtlasP56470
HPRD03949
IPIIPI00009750   
Protein Interaction databases
DIP (DOE-UCLA)P56470
IntAct (EBI)P56470
FunCoupENSG00000171747
BioGRIDLGALS4
STRING (EMBL)LGALS4
ZODIACLGALS4
Ontologies - Pathways
QuickGOP56470
Ontology : AmiGOextracellular space  cytosol  plasma membrane  cell adhesion  galactoside binding  carbohydrate binding  
Ontology : EGO-EBIextracellular space  cytosol  plasma membrane  cell adhesion  galactoside binding  carbohydrate binding  
NDEx NetworkLGALS4
Atlas of Cancer Signalling NetworkLGALS4
Wikipedia pathwaysLGALS4
Orthology - Evolution
OrthoDB3960
GeneTree (enSembl)ENSG00000171747
Phylogenetic Trees/Animal Genes : TreeFamLGALS4
HOVERGENP56470
HOGENOMP56470
Homologs : HomoloGeneLGALS4
Homology/Alignments : Family Browser (UCSC)LGALS4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLGALS4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LGALS4
dbVarLGALS4
ClinVarLGALS4
1000_GenomesLGALS4 
Exome Variant ServerLGALS4
ExAC (Exome Aggregation Consortium)LGALS4 (select the gene name)
Genetic variants : HAPMAP3960
Genomic Variants (DGV)LGALS4 [DGVbeta]
DECIPHERLGALS4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLGALS4 
Mutations
ICGC Data PortalLGALS4 
TCGA Data PortalLGALS4 
Broad Tumor PortalLGALS4
OASIS PortalLGALS4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLGALS4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLGALS4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LGALS4
DgiDB (Drug Gene Interaction Database)LGALS4
DoCM (Curated mutations)LGALS4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LGALS4 (select a term)
intoGenLGALS4
Cancer3DLGALS4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602518   
Orphanet
MedgenLGALS4
Genetic Testing Registry LGALS4
NextProtP56470 [Medical]
TSGene3960
GENETestsLGALS4
Huge Navigator LGALS4 [HugePedia]
snp3D : Map Gene to Disease3960
BioCentury BCIQLGALS4
ClinGenLGALS4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3960
Chemical/Pharm GKB GenePA30342
Clinical trialLGALS4
Miscellaneous
canSAR (ICR)LGALS4 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLGALS4
EVEXLGALS4
GoPubMedLGALS4
iHOPLGALS4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:22:24 CEST 2017

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