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LGALS4 (galectin 4)

Identity

Alias (NCBI)GAL4
L36LBP
HGNC (Hugo) LGALS4
HGNC Alias symbGAL4
HGNC Previous namelectin, galactoside-binding, soluble, 4
LocusID (NCBI) 3960
Atlas_Id 41144
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 38801674 and ends at 38812945 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGEF10L (1p36.13) / LGALS4 (19q13.2)LGALS4 (19q13.2) / ARHGEF10L (1p36.13)LGALS4 (19q13.2) / ASXL2 (2p23.3)
LGALS4 (19q13.2) / COLQ (3p25.1)LGALS4 (19q13.2) / CREBBP (16p13.3)LGALS4 (19q13.2) / EPC1 (10p11.22)
LGALS4 (19q13.2) / MUC1 (1q22)LGALS4 (19q13.2) / NFYA (6p21.1)LGALS4 (19q13.2) / RELA (11q13.1)
LGALS4 (19q13.2) / TP53 (17p13.1)MUC1 (1q22) / LGALS4 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LGALS4   6565
Cards
Entrez_Gene (NCBI)LGALS4    galectin 4
AliasesGAL4; L36LBP
GeneCards (Weizmann)LGALS4
Ensembl hg19 (Hinxton)ENSG00000171747 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171747 [Gene_View]  ENSG00000171747 [Sequence]  chr19:38801674-38812945 [Contig_View]  LGALS4 [Vega]
ICGC DataPortalENSG00000171747
TCGA cBioPortalLGALS4
AceView (NCBI)LGALS4
Genatlas (Paris)LGALS4
SOURCE (Princeton)LGALS4
Genetics Home Reference (NIH)LGALS4
Genomic and cartography
GoldenPath hg38 (UCSC)LGALS4  -     chr19:38801674-38812945 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LGALS4  -     19q13.2   [Description]    (hg19-Feb_2009)
GoldenPathLGALS4 - 19q13.2 [CytoView hg19]  LGALS4 - 19q13.2 [CytoView hg38]
ImmunoBaseENSG00000171747
Genome Data Viewer NCBILGALS4 [Mapview hg19]  
OMIM602518   
Gene and transcription
Genbank (Entrez)AA130458 AA583424 AB006781 AF014838 AK290269
RefSeq transcript (Entrez)NM_006149
Consensus coding sequences : CCDS (NCBI)LGALS4
Gene ExpressionLGALS4 [ NCBI-GEO ]   LGALS4 [ EBI - ARRAY_EXPRESS ]   LGALS4 [ SEEK ]   LGALS4 [ MEM ]
Gene Expression Viewer (FireBrowse)LGALS4 [ Firebrowse - Broad ]
GenevisibleExpression of LGALS4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3960
GTEX Portal (Tissue expression)LGALS4
Human Protein AtlasENSG00000171747-LGALS4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56470   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56470  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56470
PhosPhoSitePlusP56470
Domaine pattern : Prosite (Expaxy)GALECTIN (PS51304)   
Domains : Interpro (EBI)ConA-like_dom_sf    Galectin-like    Galectin4/6    Galectin_CRD   
Domain families : Pfam (Sanger)Gal-bind_lectin (PF00337)   
Domain families : Pfam (NCBI)pfam00337   
Domain families : Smart (EMBL)Gal-bind_lectin (SM00908)  GLECT (SM00276)  
Conserved Domain (NCBI)LGALS4
PDB (RSDB)1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
PDB Europe1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
PDB (PDBSum)1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
PDB (IMB)1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
Structural Biology KnowledgeBase1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
SCOP (Structural Classification of Proteins)1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
CATH (Classification of proteins structures)1X50    4XZP    4YLZ    4YM0    4YM1    4YM2    4YM3    5CBL    5DUU    5DUV    5DUW    5DUX   
SuperfamilyP56470
AlphaFold pdb e-kbP56470   
Human Protein Atlas [tissue]ENSG00000171747-LGALS4 [tissue]
HPRD03949
Protein Interaction databases
DIP (DOE-UCLA)P56470
IntAct (EBI)P56470
BioGRIDLGALS4
STRING (EMBL)LGALS4
ZODIACLGALS4
Ontologies - Pathways
QuickGOP56470
Ontology : AmiGOprotein binding  cytosol  plasma membrane  cell adhesion  carbohydrate binding  collagen-containing extracellular matrix  
Ontology : EGO-EBIprotein binding  cytosol  plasma membrane  cell adhesion  carbohydrate binding  collagen-containing extracellular matrix  
NDEx NetworkLGALS4
Atlas of Cancer Signalling NetworkLGALS4
Wikipedia pathwaysLGALS4
Orthology - Evolution
OrthoDB3960
GeneTree (enSembl)ENSG00000171747
Phylogenetic Trees/Animal Genes : TreeFamLGALS4
Homologs : HomoloGeneLGALS4
Homology/Alignments : Family Browser (UCSC)LGALS4
Gene fusions - Rearrangements
Fusion : QuiverLGALS4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLGALS4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LGALS4
dbVarLGALS4
ClinVarLGALS4
MonarchLGALS4
1000_GenomesLGALS4 
Exome Variant ServerLGALS4
GNOMAD BrowserENSG00000171747
Varsome BrowserLGALS4
ACMGLGALS4 variants
VarityP56470
Genomic Variants (DGV)LGALS4 [DGVbeta]
DECIPHERLGALS4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLGALS4 
Mutations
ICGC Data PortalLGALS4 
TCGA Data PortalLGALS4 
Broad Tumor PortalLGALS4
OASIS PortalLGALS4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLGALS4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLGALS4
Mutations and Diseases : HGMDLGALS4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLGALS4
DgiDB (Drug Gene Interaction Database)LGALS4
DoCM (Curated mutations)LGALS4
CIViC (Clinical Interpretations of Variants in Cancer)LGALS4
Cancer3DLGALS4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602518   
Orphanet
DisGeNETLGALS4
MedgenLGALS4
Genetic Testing Registry LGALS4
NextProtP56470 [Medical]
GENETestsLGALS4
Target ValidationLGALS4
Huge Navigator LGALS4 [HugePedia]
ClinGenLGALS4
Clinical trials, drugs, therapy
MyCancerGenomeLGALS4
Protein Interactions : CTDLGALS4
Pharm GKB GenePA30342
PharosP56470
Clinical trialLGALS4
Miscellaneous
canSAR (ICR)LGALS4
HarmonizomeLGALS4
DataMed IndexLGALS4
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLGALS4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:15:49 CEST 2021

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