Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LGALS7 (lectin, galactoside binding soluble 7)

Identity

Alias_nameslectin
Alias_symbol (synonym)GAL7
PIG1
TP53I1
LGALS7A
Other alias
HGNC (Hugo) LGALS7
LocusID (NCBI) 3963
Atlas_Id 41145
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39261608 and ends at 39264157 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LGALS7   6568
Cards
Entrez_Gene (NCBI)LGALS7  3963  lectin, galactoside binding soluble 7
AliasesGAL7; LGALS7A
GeneCards (Weizmann)LGALS7
Ensembl hg19 (Hinxton)ENSG00000205076 [Gene_View]  chr19:39261608-39264157 [Contig_View]  LGALS7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205076 [Gene_View]  chr19:39261608-39264157 [Contig_View]  LGALS7 [Vega]
ICGC DataPortalENSG00000205076
TCGA cBioPortalLGALS7
AceView (NCBI)LGALS7
Genatlas (Paris)LGALS7
WikiGenes3963
SOURCE (Princeton)LGALS7
Genetics Home Reference (NIH)LGALS7
Genomic and cartography
GoldenPath hg19 (UCSC)LGALS7  -     chr19:39261608-39264157 -  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LGALS7  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblLGALS7 - 19q13.2 [CytoView hg19]  LGALS7 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBILGALS7 [Mapview hg19]  LGALS7 [Mapview hg38]
OMIM600615   
Gene and transcription
Genbank (Entrez)BM681659 BP225960 CR456917 CV575179
RefSeq transcript (Entrez)NM_002307
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)LGALS7
Cluster EST : UnigeneHs.702546 [ NCBI ]
CGAP (NCI)Hs.702546
Alternative Splicing GalleryENSG00000205076
Gene ExpressionLGALS7 [ NCBI-GEO ]   LGALS7 [ EBI - ARRAY_EXPRESS ]   LGALS7 [ SEEK ]   LGALS7 [ MEM ]
Gene Expression Viewer (FireBrowse)LGALS7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3963
GTEX Portal (Tissue expression)LGALS7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47929   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47929  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47929
Splice isoforms : SwissVarP47929
PhosPhoSitePlusP47929
Domaine pattern : Prosite (Expaxy)GALECTIN (PS51304)   
Domains : Interpro (EBI)ConA-like_dom    Galectin_7    Galectin_CRD   
Domain families : Pfam (Sanger)Gal-bind_lectin (PF00337)   
Domain families : Pfam (NCBI)pfam00337   
Domain families : Smart (EMBL)Gal-bind_lectin (SM00908)  GLECT (SM00276)  
Conserved Domain (NCBI)LGALS7
DMDM Disease mutations3963
Blocks (Seattle)LGALS7
PDB (SRS)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
PDB (PDBSum)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
PDB (IMB)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
PDB (RSDB)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
Structural Biology KnowledgeBase1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
SCOP (Structural Classification of Proteins)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
CATH (Classification of proteins structures)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
SuperfamilyP47929
Human Protein AtlasENSG00000205076
Peptide AtlasP47929
HPRD09002
IPIIPI00219221   
Protein Interaction databases
DIP (DOE-UCLA)P47929
IntAct (EBI)P47929
FunCoupENSG00000205076
BioGRIDLGALS7
STRING (EMBL)LGALS7
ZODIACLGALS7
Ontologies - Pathways
QuickGOP47929
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLGALS7
Atlas of Cancer Signalling NetworkLGALS7
Wikipedia pathwaysLGALS7
Orthology - Evolution
OrthoDB3963
GeneTree (enSembl)ENSG00000205076
Phylogenetic Trees/Animal Genes : TreeFamLGALS7
HOVERGENP47929
HOGENOMP47929
Homologs : HomoloGeneLGALS7
Homology/Alignments : Family Browser (UCSC)LGALS7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLGALS7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LGALS7
dbVarLGALS7
ClinVarLGALS7
1000_GenomesLGALS7 
Exome Variant ServerLGALS7
ExAC (Exome Aggregation Consortium)LGALS7 (select the gene name)
Genetic variants : HAPMAP3963
Genomic Variants (DGV)LGALS7 [DGVbeta]
DECIPHER (Syndromes)19:39261608-39264157  ENSG00000205076
CONAN: Copy Number AnalysisLGALS7 
Mutations
ICGC Data PortalLGALS7 
TCGA Data PortalLGALS7 
Broad Tumor PortalLGALS7
OASIS PortalLGALS7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLGALS7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLGALS7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LGALS7
DgiDB (Drug Gene Interaction Database)LGALS7
DoCM (Curated mutations)LGALS7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LGALS7 (select a term)
intoGenLGALS7
Cancer3DLGALS7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600615   
Orphanet
MedgenLGALS7
Genetic Testing Registry LGALS7
NextProtP47929 [Medical]
TSGene3963
GENETestsLGALS7
Huge Navigator LGALS7 [HugePedia]
snp3D : Map Gene to Disease3963
BioCentury BCIQLGALS7
ClinGenLGALS7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3963
Chemical/Pharm GKB GenePA30345
Clinical trialLGALS7
Miscellaneous
canSAR (ICR)LGALS7 (select the gene name)
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLGALS7
EVEXLGALS7
GoPubMedLGALS7
iHOPLGALS7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:06:57 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.