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LGALS7B (lectin, galactoside binding soluble 7B)

Identity

Other namesGAL7
Gal-7
HKL-14
LGALS7
PI7
HGNC (Hugo) LGALS7B
LocusID (NCBI) 653499
Atlas_Id 50258
Location 19q13.2
Location_base_pair Starts at 39279850 and ends at 39282394 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LGALS7B   34447
Cards
Entrez_Gene (NCBI)LGALS7B  653499  lectin, galactoside binding soluble 7B
GeneCards (Weizmann)LGALS7B
Ensembl hg19 (Hinxton)ENSG00000178934 [Gene_View]  chr19:39279850-39282394 [Contig_View]  LGALS7B [Vega]
Ensembl hg38 (Hinxton)ENSG00000178934 [Gene_View]  chr19:39279850-39282394 [Contig_View]  LGALS7B [Vega]
ICGC DataPortalENSG00000178934
TCGA cBioPortalLGALS7B
AceView (NCBI)LGALS7B
Genatlas (Paris)LGALS7B
WikiGenes653499
SOURCE (Princeton)LGALS7B
Genomic and cartography
GoldenPath hg19 (UCSC)LGALS7B  -     chr19:39279850-39282394 +  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LGALS7B  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblLGALS7B - 19q13.2 [CytoView hg19]  LGALS7B - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBILGALS7B [Mapview hg19]  LGALS7B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW015224 BC042911 BC061588 BC073743 L07769
RefSeq transcript (Entrez)NM_001042507
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)LGALS7B
Cluster EST : UnigeneHs.558355 [ NCBI ]
CGAP (NCI)Hs.558355
Alternative Splicing : Fast-db (Paris)GSHG0015795
Alternative Splicing GalleryENSG00000178934
Gene ExpressionLGALS7B [ NCBI-GEO ]   LGALS7B [ EBI - ARRAY_EXPRESS ]   LGALS7B [ SEEK ]   LGALS7B [ MEM ]
Gene Expression Viewer (FireBrowse)LGALS7B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)653499
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47929 (Uniprot)
NextProtP47929  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47929
Splice isoforms : SwissVarP47929 (Swissvar)
PhosPhoSitePlusP47929
Domaine pattern : Prosite (Expaxy)GALECTIN (PS51304)   
Domains : Interpro (EBI)ConA-like_dom    Galectin_7    Galectin_CRD   
Domain families : Pfam (Sanger)Gal-bind_lectin (PF00337)   
Domain families : Pfam (NCBI)pfam00337   
Domain families : Smart (EMBL)Gal-bind_lectin (SM00908)  GLECT (SM00276)  
DMDM Disease mutations653499
Blocks (Seattle)LGALS7B
PDB (SRS)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
PDB (PDBSum)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
PDB (IMB)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
PDB (RSDB)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
Structural Biology KnowledgeBase1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
SCOP (Structural Classification of Proteins)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
CATH (Classification of proteins structures)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    4UW3    4UW4    4UW5    4UW6    4XBQ    5GAL   
SuperfamilyP47929
Human Protein AtlasENSG00000178934
Peptide AtlasP47929
Protein Interaction databases
DIP (DOE-UCLA)P47929
IntAct (EBI)P47929
FunCoupENSG00000178934
BioGRIDLGALS7B
STRING (EMBL)LGALS7B
ZODIACLGALS7B
Ontologies - Pathways
QuickGOP47929
Ontology : AmiGOextracellular space  nucleus  cytoplasm  apoptotic process  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  carbohydrate binding  extracellular exosome  
Ontology : EGO-EBIextracellular space  nucleus  cytoplasm  apoptotic process  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  carbohydrate binding  extracellular exosome  
NDEx Network
Atlas of Cancer Signalling NetworkLGALS7B
Wikipedia pathwaysLGALS7B
Orthology - Evolution
OrthoDB653499
GeneTree (enSembl)ENSG00000178934
Phylogenetic Trees/Animal Genes : TreeFamLGALS7B
Homologs : HomoloGeneLGALS7B
Homology/Alignments : Family Browser (UCSC)LGALS7B
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerLGALS7B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LGALS7B
dbVarLGALS7B
ClinVarLGALS7B
1000_GenomesLGALS7B 
Exome Variant ServerLGALS7B
ExAC (Exome Aggregation Consortium)LGALS7B (select the gene name)
SNP (GeneSNP Utah)LGALS7B
SNP : HGBaseLGALS7B
Genetic variants : HAPMAPLGALS7B
Genomic Variants (DGV)LGALS7B [DGVbeta]
Mutations
ICGC Data PortalLGALS7B 
TCGA Data PortalLGALS7B 
Broad Tumor PortalLGALS7B
OASIS PortalLGALS7B [ Somatic mutations - Copy number]
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LGALS7B
DgiDB (Drug Gene Interaction Database)LGALS7B
DoCM (Curated mutations)LGALS7B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LGALS7B (select a term)
intoGenLGALS7B
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:39279850-39282394
CONAN: Copy Number AnalysisLGALS7B 
Mutations and Diseases : HGMDLGALS7B
OMIM
MedgenLGALS7B
Genetic Testing Registry LGALS7B
NextProtP47929 [Medical]
TSGene653499
GENETestsLGALS7B
Huge Navigator LGALS7B [HugePedia]  LGALS7B [HugeCancerGEM]
snp3D : Map Gene to Disease653499
BioCentury BCIQLGALS7B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653499
Chemical/Pharm GKB GenePA162393892
Clinical trialLGALS7B
Miscellaneous
canSAR (ICR)LGALS7B (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLGALS7B
GoPubMedLGALS7B
iHOPLGALS7B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 17:50:57 CEST 2016

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