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LGALS7B (lectin, galactoside-binding, soluble, 7B)

Identity

Other namesGAL7
Gal-7
HKL-14
LGALS7
PI7
HGNC (Hugo) LGALS7B
LocusID (NCBI) 653499
Location 19q13.2
Location_base_pair Starts at 39279850 and ends at 39282394 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LGALS7B   34447
Cards
Entrez_Gene (NCBI)LGALS7B  653499  lectin, galactoside-binding, soluble, 7B
GeneCards (Weizmann)LGALS7B
Ensembl (Hinxton)ENSG00000178934 [Gene_View]  chr19:39279850-39282394 [Contig_View]  LGALS7B [Vega]
ICGC DataPortalENSG00000178934
cBioPortalLGALS7B
AceView (NCBI)LGALS7B
Genatlas (Paris)LGALS7B
WikiGenes653499
SOURCE (Princeton)NM_001042507
Genomic and cartography
GoldenPath (UCSC)LGALS7B  -  19q13.2   chr19:39279850-39282394 +  19q13.2   [Description]    (hg19-Feb_2009)
EnsemblLGALS7B - 19q13.2 [CytoView]
Mapping of homologs : NCBILGALS7B [Mapview]
Gene and transcription
Genbank (Entrez)AW015224 BC042911 BC061588 BC073743 L07769
RefSeq transcript (Entrez)NM_001042507
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838496 NW_004929415
Consensus coding sequences : CCDS (NCBI)LGALS7B
Cluster EST : UnigeneHs.558355 [ NCBI ]
CGAP (NCI)Hs.558355
Alternative Splicing : Fast-db (Paris)GSHG0015795
Alternative Splicing GalleryENSG00000178934
Gene ExpressionLGALS7B [ NCBI-GEO ]     LGALS7B [ SEEK ]   LGALS7B [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47929 (Uniprot)
NextProtP47929  [Medical]
With graphics : InterProP47929
Splice isoforms : SwissVarP47929 (Swissvar)
Domaine pattern : Prosite (Expaxy)GALECTIN (PS51304)   
Domains : Interpro (EBI)ConA-like_lec_gl_sf [organisation]   ConA-like_subgrp [organisation]   Galectin_CRD [organisation]  
Related proteins : CluSTrP47929
Domain families : Pfam (Sanger)Gal-bind_lectin (PF00337)   
Domain families : Pfam (NCBI)pfam00337   
Domain families : Smart (EMBL)Gal-bind_lectin (SM00908)  GLECT (SM00276)  
DMDM Disease mutations653499
Blocks (Seattle)P47929
PDB (SRS)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    5GAL   
PDB (PDBSum)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    5GAL   
PDB (IMB)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    5GAL   
PDB (RSDB)1BKZ    2GAL    3GAL    3ZXE    3ZXF    4GAL    5GAL   
Human Protein AtlasENSG00000178934 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP47929
Protein Interaction databases
DIP (DOE-UCLA)P47929
IntAct (EBI)P47929
FunCoupENSG00000178934
BioGRIDLGALS7B
InParanoidP47929
Interologous Interaction database P47929
IntegromeDBLGALS7B
STRING (EMBL)LGALS7B
Ontologies - Pathways
Ontology : AmiGOextracellular space  nucleus  cytoplasm  apoptotic process  heterophilic cell-cell adhesion  carbohydrate binding  extracellular vesicular exosome  
Ontology : EGO-EBIextracellular space  nucleus  cytoplasm  apoptotic process  heterophilic cell-cell adhesion  carbohydrate binding  extracellular vesicular exosome  
Protein Interaction DatabaseLGALS7B
Wikipedia pathwaysLGALS7B
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LGALS7B
snp3D : Map Gene to Disease653499
SNP (GeneSNP Utah)LGALS7B
SNP : HGBaseLGALS7B
Genetic variants : HAPMAPLGALS7B
Exome VariantLGALS7B
1000_GenomesLGALS7B 
ICGC programENSG00000178934 
Mutations and Diseases : HGMDLGALS7B
Mutations and Diseases : intOGenLGALS7B
Genomic VariantsLGALS7B  LGALS7B [DGVbeta]
dbVarLGALS7B
ClinVarLGALS7B
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM
MedgenLGALS7B
GENETestsLGALS7B
Disease Genetic AssociationLGALS7B
Huge Navigator LGALS7B [HugePedia]  LGALS7B [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneLGALS7B
Homology/Alignments : Family Browser (UCSC)LGALS7B
Phylogenetic Trees/Animal Genes : TreeFamLGALS7B
Chemical/Protein Interactions : CTD653499
Chemical/Pharm GKB GenePA162393892
Clinical trialLGALS7B
Cancer Resource (Charite)ENSG00000178934
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineLGALS7B
iHOPLGALS7B
OncoSearchLGALS7B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:52:37 CEST 2014

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