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LGALS9B (lectin, galactoside-binding, soluble, 9B)

Identity

Alias_nameslectin, galactoside-binding, soluble, 9B
Other alias-
HGNC (Hugo) LGALS9B
LocusID (NCBI) 284194
Atlas_Id 65241
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 20353176 and ends at 20370848 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LGALS9 (17q11.2) / LGALS9B (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LGALS9B   24842
Cards
Entrez_Gene (NCBI)LGALS9B  284194  lectin, galactoside-binding, soluble, 9B
Aliases
GeneCards (Weizmann)LGALS9B
Ensembl hg19 (Hinxton)ENSG00000170298 [Gene_View]  chr17:20353176-20370848 [Contig_View]  LGALS9B [Vega]
Ensembl hg38 (Hinxton)ENSG00000170298 [Gene_View]  chr17:20353176-20370848 [Contig_View]  LGALS9B [Vega]
ICGC DataPortalENSG00000170298
TCGA cBioPortalLGALS9B
AceView (NCBI)LGALS9B
Genatlas (Paris)LGALS9B
WikiGenes284194
SOURCE (Princeton)LGALS9B
Genetics Home Reference (NIH)LGALS9B
Genomic and cartography
GoldenPath hg19 (UCSC)LGALS9B  -     chr17:20353176-20370848 -  17p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LGALS9B  -     17p11.2   [Description]    (hg38-Dec_2013)
EnsemblLGALS9B - 17p11.2 [CytoView hg19]  LGALS9B - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBILGALS9B [Mapview hg19]  LGALS9B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK290263 AK296659 BC105943 BM769345 DA668702
RefSeq transcript (Entrez)NM_001042685
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_002718 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)LGALS9B
Cluster EST : UnigeneHs.610820 [ NCBI ]
CGAP (NCI)Hs.610820
Alternative Splicing GalleryENSG00000170298
Gene ExpressionLGALS9B [ NCBI-GEO ]   LGALS9B [ EBI - ARRAY_EXPRESS ]   LGALS9B [ SEEK ]   LGALS9B [ MEM ]
Gene Expression Viewer (FireBrowse)LGALS9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284194
GTEX Portal (Tissue expression)LGALS9B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3B8N2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3B8N2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3B8N2
Splice isoforms : SwissVarQ3B8N2
PhosPhoSitePlusQ3B8N2
Domaine pattern : Prosite (Expaxy)GALECTIN (PS51304)   
Domains : Interpro (EBI)ConA-like_dom    Galectin_CRD   
Domain families : Pfam (Sanger)Gal-bind_lectin (PF00337)   
Domain families : Pfam (NCBI)pfam00337   
Domain families : Smart (EMBL)Gal-bind_lectin (SM00908)  GLECT (SM00276)  
Conserved Domain (NCBI)LGALS9B
DMDM Disease mutations284194
Blocks (Seattle)LGALS9B
SuperfamilyQ3B8N2
Human Protein AtlasENSG00000170298
Peptide AtlasQ3B8N2
IPIIPI00472523   IPI00903067   
Protein Interaction databases
DIP (DOE-UCLA)Q3B8N2
IntAct (EBI)Q3B8N2
FunCoupENSG00000170298
BioGRIDLGALS9B
STRING (EMBL)LGALS9B
ZODIACLGALS9B
Ontologies - Pathways
QuickGOQ3B8N2
Ontology : AmiGOprotein binding  carbohydrate binding  
Ontology : EGO-EBIprotein binding  carbohydrate binding  
NDEx NetworkLGALS9B
Atlas of Cancer Signalling NetworkLGALS9B
Wikipedia pathwaysLGALS9B
Orthology - Evolution
OrthoDB284194
GeneTree (enSembl)ENSG00000170298
Phylogenetic Trees/Animal Genes : TreeFamLGALS9B
HOVERGENQ3B8N2
HOGENOMQ3B8N2
Homologs : HomoloGeneLGALS9B
Homology/Alignments : Family Browser (UCSC)LGALS9B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLGALS9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LGALS9B
dbVarLGALS9B
ClinVarLGALS9B
1000_GenomesLGALS9B 
Exome Variant ServerLGALS9B
ExAC (Exome Aggregation Consortium)LGALS9B (select the gene name)
Genetic variants : HAPMAP284194
Genomic Variants (DGV)LGALS9B [DGVbeta]
DECIPHER (Syndromes)17:20353176-20370848  ENSG00000170298
CONAN: Copy Number AnalysisLGALS9B 
Mutations
ICGC Data PortalLGALS9B 
TCGA Data PortalLGALS9B 
Broad Tumor PortalLGALS9B
OASIS PortalLGALS9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLGALS9B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLGALS9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LGALS9B
DgiDB (Drug Gene Interaction Database)LGALS9B
DoCM (Curated mutations)LGALS9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LGALS9B (select a term)
intoGenLGALS9B
Cancer3DLGALS9B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLGALS9B
Genetic Testing Registry LGALS9B
NextProtQ3B8N2 [Medical]
TSGene284194
GENETestsLGALS9B
Huge Navigator LGALS9B [HugePedia]
snp3D : Map Gene to Disease284194
BioCentury BCIQLGALS9B
ClinGenLGALS9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284194
Chemical/Pharm GKB GenePA162393903
Clinical trialLGALS9B
Miscellaneous
canSAR (ICR)LGALS9B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLGALS9B
EVEXLGALS9B
GoPubMedLGALS9B
iHOPLGALS9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:59 CET 2017

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