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LGALS9C (galectin 9C)

Identity

Alias_nameslectin, galactoside-binding, soluble, 9C
Other alias-
HGNC (Hugo) LGALS9C
LocusID (NCBI) 654346
Atlas_Id 65242
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18476785 and ends at 18494945 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LGALS9C   33874
Cards
Entrez_Gene (NCBI)LGALS9C  654346  galectin 9C
Aliases
GeneCards (Weizmann)LGALS9C
Ensembl hg19 (Hinxton)ENSG00000171916 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171916 [Gene_View]  chr17:18476785-18494945 [Contig_View]  LGALS9C [Vega]
ICGC DataPortalENSG00000171916
TCGA cBioPortalLGALS9C
AceView (NCBI)LGALS9C
Genatlas (Paris)LGALS9C
WikiGenes654346
SOURCE (Princeton)LGALS9C
Genetics Home Reference (NIH)LGALS9C
Genomic and cartography
GoldenPath hg38 (UCSC)LGALS9C  -     chr17:18476785-18494945 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LGALS9C  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblLGALS9C - 17p11.2 [CytoView hg19]  LGALS9C - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBILGALS9C [Mapview hg19]  LGALS9C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK315818 BC073889 BM769737 DA426549 HQ448175
RefSeq transcript (Entrez)NM_001040078
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LGALS9C
Cluster EST : UnigeneHs.462402 [ NCBI ]
CGAP (NCI)Hs.462402
Alternative Splicing GalleryENSG00000171916
Gene ExpressionLGALS9C [ NCBI-GEO ]   LGALS9C [ EBI - ARRAY_EXPRESS ]   LGALS9C [ SEEK ]   LGALS9C [ MEM ]
Gene Expression Viewer (FireBrowse)LGALS9C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)654346
GTEX Portal (Tissue expression)LGALS9C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6DKI2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6DKI2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6DKI2
Splice isoforms : SwissVarQ6DKI2
PhosPhoSitePlusQ6DKI2
Domaine pattern : Prosite (Expaxy)GALECTIN (PS51304)   
Domains : Interpro (EBI)ConA-like_dom    Galectin_CRD   
Domain families : Pfam (Sanger)Gal-bind_lectin (PF00337)   
Domain families : Pfam (NCBI)pfam00337   
Domain families : Smart (EMBL)Gal-bind_lectin (SM00908)  GLECT (SM00276)  
Conserved Domain (NCBI)LGALS9C
DMDM Disease mutations654346
Blocks (Seattle)LGALS9C
SuperfamilyQ6DKI2
Human Protein AtlasENSG00000171916
Peptide AtlasQ6DKI2
IPIIPI00456941   IPI00943216   
Protein Interaction databases
DIP (DOE-UCLA)Q6DKI2
IntAct (EBI)Q6DKI2
FunCoupENSG00000171916
BioGRIDLGALS9C
STRING (EMBL)LGALS9C
ZODIACLGALS9C
Ontologies - Pathways
QuickGOQ6DKI2
Ontology : AmiGOprotein binding  cytosol  carbohydrate binding  
Ontology : EGO-EBIprotein binding  cytosol  carbohydrate binding  
NDEx NetworkLGALS9C
Atlas of Cancer Signalling NetworkLGALS9C
Wikipedia pathwaysLGALS9C
Orthology - Evolution
OrthoDB654346
GeneTree (enSembl)ENSG00000171916
Phylogenetic Trees/Animal Genes : TreeFamLGALS9C
HOVERGENQ6DKI2
HOGENOMQ6DKI2
Homologs : HomoloGeneLGALS9C
Homology/Alignments : Family Browser (UCSC)LGALS9C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLGALS9C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LGALS9C
dbVarLGALS9C
ClinVarLGALS9C
1000_GenomesLGALS9C 
Exome Variant ServerLGALS9C
ExAC (Exome Aggregation Consortium)LGALS9C (select the gene name)
Genetic variants : HAPMAP654346
Genomic Variants (DGV)LGALS9C [DGVbeta]
DECIPHERLGALS9C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLGALS9C 
Mutations
ICGC Data PortalLGALS9C 
TCGA Data PortalLGALS9C 
Broad Tumor PortalLGALS9C
OASIS PortalLGALS9C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLGALS9C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLGALS9C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LGALS9C
DgiDB (Drug Gene Interaction Database)LGALS9C
DoCM (Curated mutations)LGALS9C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LGALS9C (select a term)
intoGenLGALS9C
Cancer3DLGALS9C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLGALS9C
Genetic Testing Registry LGALS9C
NextProtQ6DKI2 [Medical]
TSGene654346
GENETestsLGALS9C
Target ValidationLGALS9C
Huge Navigator LGALS9C [HugePedia]
snp3D : Map Gene to Disease654346
BioCentury BCIQLGALS9C
ClinGenLGALS9C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654346
Chemical/Pharm GKB GenePA162393930
Clinical trialLGALS9C
Miscellaneous
canSAR (ICR)LGALS9C (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLGALS9C
EVEXLGALS9C
GoPubMedLGALS9C
iHOPLGALS9C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:39 CEST 2017

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