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LGALSL (galectin like)

Identity

Alias_nameslectin, galactoside-binding-like
Alias_symbol (synonym)HSPC159
GRP
Other alias
HGNC (Hugo) LGALSL
LocusID (NCBI) 29094
Atlas_Id 65243
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 64454193 and ends at 64461383 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LGALSL   25012
Cards
Entrez_Gene (NCBI)LGALSL  29094  galectin like
AliasesGRP; HSPC159
GeneCards (Weizmann)LGALSL
Ensembl hg19 (Hinxton)ENSG00000119862 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119862 [Gene_View]  chr2:64454193-64461383 [Contig_View]  LGALSL [Vega]
ICGC DataPortalENSG00000119862
TCGA cBioPortalLGALSL
AceView (NCBI)LGALSL
Genatlas (Paris)LGALSL
WikiGenes29094
SOURCE (Princeton)LGALSL
Genetics Home Reference (NIH)LGALSL
Genomic and cartography
GoldenPath hg38 (UCSC)LGALSL  -     chr2:64454193-64461383 +  2p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LGALSL  -     2p14   [Description]    (hg19-Feb_2009)
EnsemblLGALSL - 2p14 [CytoView hg19]  LGALSL - 2p14 [CytoView hg38]
Mapping of homologs : NCBILGALSL [Mapview hg19]  LGALSL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161508 AK025603 AK314656 AM393169 BC036082
RefSeq transcript (Entrez)NM_014181
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LGALSL
Cluster EST : UnigeneHs.372208 [ NCBI ]
CGAP (NCI)Hs.372208
Alternative Splicing GalleryENSG00000119862
Gene ExpressionLGALSL [ NCBI-GEO ]   LGALSL [ EBI - ARRAY_EXPRESS ]   LGALSL [ SEEK ]   LGALSL [ MEM ]
Gene Expression Viewer (FireBrowse)LGALSL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29094
GTEX Portal (Tissue expression)LGALSL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3ZCW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3ZCW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3ZCW2
Splice isoforms : SwissVarQ3ZCW2
PhosPhoSitePlusQ3ZCW2
Domaine pattern : Prosite (Expaxy)GALECTIN (PS51304)   
Domains : Interpro (EBI)ConA-like_dom    Galectin-rel    Galectin_CRD   
Domain families : Pfam (Sanger)Gal-bind_lectin (PF00337)   
Domain families : Pfam (NCBI)pfam00337   
Domain families : Smart (EMBL)Gal-bind_lectin (SM00908)  GLECT (SM00276)  
Conserved Domain (NCBI)LGALSL
DMDM Disease mutations29094
Blocks (Seattle)LGALSL
PDB (SRS)2JJ6    3B9C   
PDB (PDBSum)2JJ6    3B9C   
PDB (IMB)2JJ6    3B9C   
PDB (RSDB)2JJ6    3B9C   
Structural Biology KnowledgeBase2JJ6    3B9C   
SCOP (Structural Classification of Proteins)2JJ6    3B9C   
CATH (Classification of proteins structures)2JJ6    3B9C   
SuperfamilyQ3ZCW2
Human Protein AtlasENSG00000119862
Peptide AtlasQ3ZCW2
HPRD13708
IPIIPI00023549   IPI00917248   IPI00916507   
Protein Interaction databases
DIP (DOE-UCLA)Q3ZCW2
IntAct (EBI)Q3ZCW2
FunCoupENSG00000119862
BioGRIDLGALSL
STRING (EMBL)LGALSL
ZODIACLGALSL
Ontologies - Pathways
QuickGOQ3ZCW2
Ontology : AmiGOprotein binding  intracellular  carbohydrate binding  
Ontology : EGO-EBIprotein binding  intracellular  carbohydrate binding  
NDEx NetworkLGALSL
Atlas of Cancer Signalling NetworkLGALSL
Wikipedia pathwaysLGALSL
Orthology - Evolution
OrthoDB29094
GeneTree (enSembl)ENSG00000119862
Phylogenetic Trees/Animal Genes : TreeFamLGALSL
HOVERGENQ3ZCW2
HOGENOMQ3ZCW2
Homologs : HomoloGeneLGALSL
Homology/Alignments : Family Browser (UCSC)LGALSL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLGALSL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LGALSL
dbVarLGALSL
ClinVarLGALSL
1000_GenomesLGALSL 
Exome Variant ServerLGALSL
ExAC (Exome Aggregation Consortium)LGALSL (select the gene name)
Genetic variants : HAPMAP29094
Genomic Variants (DGV)LGALSL [DGVbeta]
DECIPHERLGALSL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLGALSL 
Mutations
ICGC Data PortalLGALSL 
TCGA Data PortalLGALSL 
Broad Tumor PortalLGALSL
OASIS PortalLGALSL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLGALSL
BioMutasearch LGALSL
DgiDB (Drug Gene Interaction Database)LGALSL
DoCM (Curated mutations)LGALSL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LGALSL (select a term)
intoGenLGALSL
Cancer3DLGALSL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLGALSL
Genetic Testing Registry LGALSL
NextProtQ3ZCW2 [Medical]
TSGene29094
GENETestsLGALSL
Huge Navigator LGALSL [HugePedia]
snp3D : Map Gene to Disease29094
BioCentury BCIQLGALSL
ClinGenLGALSL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29094
Chemical/Pharm GKB GenePA166048966
Clinical trialLGALSL
Miscellaneous
canSAR (ICR)LGALSL (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLGALSL
EVEXLGALSL
GoPubMedLGALSL
iHOPLGALSL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:19:23 CEST 2017

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