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LGI2 (leucine rich repeat LGI family member 2)

Identity

Alias_namesleucine-rich repeat LGI family, member 2
Alias_symbol (synonym)KIAA1916
FLJ10675
Other aliasLGIL2
HGNC (Hugo) LGI2
LocusID (NCBI) 55203
Atlas_Id 65244
Location 4p15.2  [Link to chromosome band 4p15]
Location_base_pair Starts at 24998849 and ends at 25030792 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LGI2   18710
Cards
Entrez_Gene (NCBI)LGI2  55203  leucine rich repeat LGI family member 2
AliasesLGIL2
GeneCards (Weizmann)LGI2
Ensembl hg19 (Hinxton)ENSG00000153012 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153012 [Gene_View]  chr4:24998849-25030792 [Contig_View]  LGI2 [Vega]
ICGC DataPortalENSG00000153012
TCGA cBioPortalLGI2
AceView (NCBI)LGI2
Genatlas (Paris)LGI2
WikiGenes55203
SOURCE (Princeton)LGI2
Genetics Home Reference (NIH)LGI2
Genomic and cartography
GoldenPath hg38 (UCSC)LGI2  -     chr4:24998849-25030792 -  4p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LGI2  -     4p15.2   [Description]    (hg19-Feb_2009)
EnsemblLGI2 - 4p15.2 [CytoView hg19]  LGI2 - 4p15.2 [CytoView hg38]
Mapping of homologs : NCBILGI2 [Mapview hg19]  LGI2 [Mapview hg38]
OMIM608301   
Gene and transcription
Genbank (Entrez)AB067503 AF052098 AF467955 AJ487516 AJ487958
RefSeq transcript (Entrez)NM_018176
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LGI2
Cluster EST : UnigeneHs.12488 [ NCBI ]
CGAP (NCI)Hs.12488
Alternative Splicing GalleryENSG00000153012
Gene ExpressionLGI2 [ NCBI-GEO ]   LGI2 [ EBI - ARRAY_EXPRESS ]   LGI2 [ SEEK ]   LGI2 [ MEM ]
Gene Expression Viewer (FireBrowse)LGI2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55203
GTEX Portal (Tissue expression)LGI2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0V4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0V4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0V4
Splice isoforms : SwissVarQ8N0V4
PhosPhoSitePlusQ8N0V4
Domaine pattern : Prosite (Expaxy)EAR (PS50912)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    EAR    EPTP    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)EPTP (PF03736)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam03736    pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)LGI2
DMDM Disease mutations55203
Blocks (Seattle)LGI2
SuperfamilyQ8N0V4
Human Protein AtlasENSG00000153012
Peptide AtlasQ8N0V4
HPRD06431
IPIIPI00166085   IPI00744342   IPI00968058   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0V4
IntAct (EBI)Q8N0V4
FunCoupENSG00000153012
BioGRIDLGI2
STRING (EMBL)LGI2
ZODIACLGI2
Ontologies - Pathways
QuickGOQ8N0V4
Ontology : AmiGOextracellular region  extracellular space  
Ontology : EGO-EBIextracellular region  extracellular space  
NDEx NetworkLGI2
Atlas of Cancer Signalling NetworkLGI2
Wikipedia pathwaysLGI2
Orthology - Evolution
OrthoDB55203
GeneTree (enSembl)ENSG00000153012
Phylogenetic Trees/Animal Genes : TreeFamLGI2
HOVERGENQ8N0V4
HOGENOMQ8N0V4
Homologs : HomoloGeneLGI2
Homology/Alignments : Family Browser (UCSC)LGI2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLGI2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LGI2
dbVarLGI2
ClinVarLGI2
1000_GenomesLGI2 
Exome Variant ServerLGI2
ExAC (Exome Aggregation Consortium)LGI2 (select the gene name)
Genetic variants : HAPMAP55203
Genomic Variants (DGV)LGI2 [DGVbeta]
DECIPHERLGI2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLGI2 
Mutations
ICGC Data PortalLGI2 
TCGA Data PortalLGI2 
Broad Tumor PortalLGI2
OASIS PortalLGI2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLGI2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLGI2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LGI2
DgiDB (Drug Gene Interaction Database)LGI2
DoCM (Curated mutations)LGI2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LGI2 (select a term)
intoGenLGI2
Cancer3DLGI2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608301   
Orphanet
MedgenLGI2
Genetic Testing Registry LGI2
NextProtQ8N0V4 [Medical]
TSGene55203
GENETestsLGI2
Target ValidationLGI2
Huge Navigator LGI2 [HugePedia]
snp3D : Map Gene to Disease55203
BioCentury BCIQLGI2
ClinGenLGI2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55203
Chemical/Pharm GKB GenePA38654
Clinical trialLGI2
Miscellaneous
canSAR (ICR)LGI2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLGI2
EVEXLGI2
GoPubMedLGI2
iHOPLGI2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:48 CEST 2017

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