Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LHFPL1 (LHFPL tetraspan subfamily member 1)

Identity

Other alias-
HGNC (Hugo) LHFPL1
LocusID (NCBI) 340596
Atlas_Id 56080
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 112630651 and ends at 112680147 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LHFPL1   6587
Cards
Entrez_Gene (NCBI)LHFPL1  340596  LHFPL tetraspan subfamily member 1
Aliases
GeneCards (Weizmann)LHFPL1
Ensembl hg19 (Hinxton)ENSG00000182508 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182508 [Gene_View]  chrX:112630651-112680147 [Contig_View]  LHFPL1 [Vega]
ICGC DataPortalENSG00000182508
TCGA cBioPortalLHFPL1
AceView (NCBI)LHFPL1
Genatlas (Paris)LHFPL1
WikiGenes340596
SOURCE (Princeton)LHFPL1
Genetics Home Reference (NIH)LHFPL1
Genomic and cartography
GoldenPath hg38 (UCSC)LHFPL1  -     chrX:112630651-112680147 -  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LHFPL1  -     Xq23   [Description]    (hg19-Feb_2009)
EnsemblLHFPL1 - Xq23 [CytoView hg19]  LHFPL1 - Xq23 [CytoView hg38]
Mapping of homologs : NCBILHFPL1 [Mapview hg19]  LHFPL1 [Mapview hg38]
OMIM300566   
Gene and transcription
Genbank (Entrez)AK289946 AY217350 AY358208 BC100785 BC100786
RefSeq transcript (Entrez)NM_178175
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LHFPL1
Cluster EST : UnigeneHs.297420 [ NCBI ]
CGAP (NCI)Hs.297420
Alternative Splicing GalleryENSG00000182508
Gene ExpressionLHFPL1 [ NCBI-GEO ]   LHFPL1 [ EBI - ARRAY_EXPRESS ]   LHFPL1 [ SEEK ]   LHFPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)LHFPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340596
GTEX Portal (Tissue expression)LHFPL1
Human Protein AtlasENSG00000182508-LHFPL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WI0
Splice isoforms : SwissVarQ86WI0
PhosPhoSitePlusQ86WI0
Domains : Interpro (EBI)Lipome_HGMIC_fus_partner-like   
Domain families : Pfam (Sanger)L_HMGIC_fpl (PF10242)   
Domain families : Pfam (NCBI)pfam10242   
Conserved Domain (NCBI)LHFPL1
DMDM Disease mutations340596
Blocks (Seattle)LHFPL1
SuperfamilyQ86WI0
Human Protein Atlas [tissue]ENSG00000182508-LHFPL1 [tissue]
Peptide AtlasQ86WI0
HPRD06610
IPIIPI01014864   IPI00784831   
Protein Interaction databases
DIP (DOE-UCLA)Q86WI0
IntAct (EBI)Q86WI0
FunCoupENSG00000182508
BioGRIDLHFPL1
STRING (EMBL)LHFPL1
ZODIACLHFPL1
Ontologies - Pathways
QuickGOQ86WI0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLHFPL1
Atlas of Cancer Signalling NetworkLHFPL1
Wikipedia pathwaysLHFPL1
Orthology - Evolution
OrthoDB340596
GeneTree (enSembl)ENSG00000182508
Phylogenetic Trees/Animal Genes : TreeFamLHFPL1
HOVERGENQ86WI0
HOGENOMQ86WI0
Homologs : HomoloGeneLHFPL1
Homology/Alignments : Family Browser (UCSC)LHFPL1
Gene fusions - Rearrangements
Fusion : QuiverLHFPL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLHFPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LHFPL1
dbVarLHFPL1
ClinVarLHFPL1
1000_GenomesLHFPL1 
Exome Variant ServerLHFPL1
ExAC (Exome Aggregation Consortium)ENSG00000182508
GNOMAD BrowserENSG00000182508
Genetic variants : HAPMAP340596
Genomic Variants (DGV)LHFPL1 [DGVbeta]
DECIPHERLHFPL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLHFPL1 
Mutations
ICGC Data PortalLHFPL1 
TCGA Data PortalLHFPL1 
Broad Tumor PortalLHFPL1
OASIS PortalLHFPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLHFPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLHFPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch LHFPL1
DgiDB (Drug Gene Interaction Database)LHFPL1
DoCM (Curated mutations)LHFPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LHFPL1 (select a term)
intoGenLHFPL1
Cancer3DLHFPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300566   
Orphanet
DisGeNETLHFPL1
MedgenLHFPL1
Genetic Testing Registry LHFPL1
NextProtQ86WI0 [Medical]
TSGene340596
GENETestsLHFPL1
Target ValidationLHFPL1
Huge Navigator LHFPL1 [HugePedia]
snp3D : Map Gene to Disease340596
BioCentury BCIQLHFPL1
ClinGenLHFPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340596
Chemical/Pharm GKB GenePA30359
Clinical trialLHFPL1
Miscellaneous
canSAR (ICR)LHFPL1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLHFPL1
EVEXLHFPL1
GoPubMedLHFPL1
iHOPLHFPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 28 13:20:23 CET 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.