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LHFPL4 (lipoma HMGIC fusion partner-like 4)

Identity

Other alias-
HGNC (Hugo) LHFPL4
LocusID (NCBI) 375323
Atlas_Id 56375
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 9540045 and ends at 9595486 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LHFPL4 (3p25.3) / LHFPL4 (3p25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LHFPL4   29568
Cards
Entrez_Gene (NCBI)LHFPL4  375323  lipoma HMGIC fusion partner-like 4
Aliases
GeneCards (Weizmann)LHFPL4
Ensembl hg19 (Hinxton)ENSG00000156959 [Gene_View]  chr3:9540045-9595486 [Contig_View]  LHFPL4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156959 [Gene_View]  chr3:9540045-9595486 [Contig_View]  LHFPL4 [Vega]
ICGC DataPortalENSG00000156959
TCGA cBioPortalLHFPL4
AceView (NCBI)LHFPL4
Genatlas (Paris)LHFPL4
WikiGenes375323
SOURCE (Princeton)LHFPL4
Genetics Home Reference (NIH)LHFPL4
Genomic and cartography
GoldenPath hg19 (UCSC)LHFPL4  -     chr3:9540045-9595486 -  3p25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LHFPL4  -     3p25.3   [Description]    (hg38-Dec_2013)
EnsemblLHFPL4 - 3p25.3 [CytoView hg19]  LHFPL4 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBILHFPL4 [Mapview hg19]  LHFPL4 [Mapview hg38]
OMIM610240   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_198560
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LHFPL4
Cluster EST : UnigeneHs.56782 [ NCBI ]
CGAP (NCI)Hs.56782
Alternative Splicing GalleryENSG00000156959
Gene ExpressionLHFPL4 [ NCBI-GEO ]   LHFPL4 [ EBI - ARRAY_EXPRESS ]   LHFPL4 [ SEEK ]   LHFPL4 [ MEM ]
Gene Expression Viewer (FireBrowse)LHFPL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375323
GTEX Portal (Tissue expression)LHFPL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7J7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7J7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7J7
Splice isoforms : SwissVarQ7Z7J7
PhosPhoSitePlusQ7Z7J7
Domains : Interpro (EBI)Lipome_HGMIC_fus_partner-like   
Domain families : Pfam (Sanger)L_HMGIC_fpl (PF10242)   
Domain families : Pfam (NCBI)pfam10242   
Conserved Domain (NCBI)LHFPL4
DMDM Disease mutations375323
Blocks (Seattle)LHFPL4
SuperfamilyQ7Z7J7
Human Protein AtlasENSG00000156959
Peptide AtlasQ7Z7J7
HPRD17361
IPIIPI00376467   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7J7
IntAct (EBI)Q7Z7J7
FunCoupENSG00000156959
BioGRIDLHFPL4
STRING (EMBL)LHFPL4
ZODIACLHFPL4
Ontologies - Pathways
QuickGOQ7Z7J7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLHFPL4
Atlas of Cancer Signalling NetworkLHFPL4
Wikipedia pathwaysLHFPL4
Orthology - Evolution
OrthoDB375323
GeneTree (enSembl)ENSG00000156959
Phylogenetic Trees/Animal Genes : TreeFamLHFPL4
HOVERGENQ7Z7J7
HOGENOMQ7Z7J7
Homologs : HomoloGeneLHFPL4
Homology/Alignments : Family Browser (UCSC)LHFPL4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLHFPL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LHFPL4
dbVarLHFPL4
ClinVarLHFPL4
1000_GenomesLHFPL4 
Exome Variant ServerLHFPL4
ExAC (Exome Aggregation Consortium)LHFPL4 (select the gene name)
Genetic variants : HAPMAP375323
Genomic Variants (DGV)LHFPL4 [DGVbeta]
DECIPHER (Syndromes)3:9540045-9595486  ENSG00000156959
CONAN: Copy Number AnalysisLHFPL4 
Mutations
ICGC Data PortalLHFPL4 
TCGA Data PortalLHFPL4 
Broad Tumor PortalLHFPL4
OASIS PortalLHFPL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLHFPL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLHFPL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LHFPL4
DgiDB (Drug Gene Interaction Database)LHFPL4
DoCM (Curated mutations)LHFPL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LHFPL4 (select a term)
intoGenLHFPL4
Cancer3DLHFPL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610240   
Orphanet
MedgenLHFPL4
Genetic Testing Registry LHFPL4
NextProtQ7Z7J7 [Medical]
TSGene375323
GENETestsLHFPL4
Huge Navigator LHFPL4 [HugePedia]
snp3D : Map Gene to Disease375323
BioCentury BCIQLHFPL4
ClinGenLHFPL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375323
Chemical/Pharm GKB GenePA164741909
Clinical trialLHFPL4
Miscellaneous
canSAR (ICR)LHFPL4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLHFPL4
EVEXLHFPL4
GoPubMedLHFPL4
iHOPLHFPL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:07:00 CEST 2017

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