Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LHFPL6 (LHFPL tetraspan subfamily member 6)

Identity

Other aliasLHFP
HGNC (Hugo) LHFPL6
LocusID (NCBI) 10186
Atlas_Id 56958
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 39342892 and ends at 39603219 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LHFPL6   6586
Cards
Entrez_Gene (NCBI)LHFPL6  10186  LHFPL tetraspan subfamily member 6
AliasesLHFP
GeneCards (Weizmann)LHFPL6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:39342892-39603219 [Contig_View]  LHFPL6 [Vega]
TCGA cBioPortalLHFPL6
AceView (NCBI)LHFPL6
Genatlas (Paris)LHFPL6
WikiGenes101864/TD>8/tR>
SOURCE (Princeton)LHFPL6
Genetics Home Reference (NIH)LHFPL6
Genomic and cartography
GoldenPath hg38 (UCSC)LHFPL6  -     chr13:39342892-39603219 -  13q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LHFPL6  -     13q13.3   [Description]    (hg19-Feb_2009)
EnsemblLHFPL6 - 13q13.3 [CytoView hg19]  LHFPL6 - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBILHFPL6 [Mapview hg19]  LHFPL6 [Mapview hg38]
OMIM606710   
Gene and transcription
Genbank (Entrez)AF098807 AK129819 AK223369 AK313036 AL137388
RefSeq transcript (Entrez)NM_005780
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LHFPL6
Cluster EST : UnigeneHs.507798 [ NCBI ]
CGAP (NCI)Hs.507798
Gene ExpressionLHFPL6 [ NCBI-GEO ]   LHFPL6 [ EBI - ARRAY_EXPRESS ]   LHFPL6 [ SEEK ]   LHFPL6 [ MEM ]
Gene Expression Viewer (FireBrowse)LHFPL6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10186
GTEX Portal (Tissue expression)LHFPL6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y693   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y693  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y693
Splice isoforms : SwissVarQ9Y693
PhosPhoSitePlusQ9Y693
Domains : Interpro (EBI)Lipome_HGMIC_fus_partner-like   
Domain families : Pfam (Sanger)L_HMGIC_fpl (PF10242)   
Domain families : Pfam (NCBI)pfam10242   
Conserved Domain (NCBI)LHFPL6
DMDM Disease mutations10186
Blocks (Seattle)LHFPL6
SuperfamilyQ9Y693
Peptide AtlasQ9Y693
IPIIPI00785082   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y693
IntAct (EBI)Q9Y693
BioGRIDLHFPL6
STRING (EMBL)LHFPL6
ZODIACLHFPL6
Ontologies - Pathways
QuickGOQ9Y693
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLHFPL6
Atlas of Cancer Signalling NetworkLHFPL6
Wikipedia pathwaysLHFPL6
Orthology - Evolution
OrthoDB10186
Phylogenetic Trees/Animal Genes : TreeFamLHFPL6
HOVERGENQ9Y693
HOGENOMQ9Y693
Homologs : HomoloGeneLHFPL6
Homology/Alignments : Family Browser (UCSC)LHFPL6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLHFPL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LHFPL6
dbVarLHFPL6
ClinVarLHFPL6
1000_GenomesLHFPL6 
Exome Variant ServerLHFPL6
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP10186
Genomic Variants (DGV)LHFPL6 [DGVbeta]
DECIPHERLHFPL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLHFPL6 
Mutations
ICGC Data PortalLHFPL6 
TCGA Data PortalLHFPL6 
Broad Tumor PortalLHFPL6
OASIS PortalLHFPL6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLHFPL6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LHFPL6
DgiDB (Drug Gene Interaction Database)LHFPL6
DoCM (Curated mutations)LHFPL6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LHFPL6 (select a term)
intoGenLHFPL6
Cancer3DLHFPL6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606710   
Orphanet
MedgenLHFPL6
Genetic Testing Registry LHFPL6
NextProtQ9Y693 [Medical]
TSGene10186
GENETestsLHFPL6
Target ValidationLHFPL6
Huge Navigator LHFPL6 [HugePedia]
snp3D : Map Gene to Disease10186
BioCentury BCIQLHFPL6
ClinGenLHFPL6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10186
Chemical/Pharm GKB GenePA30358
Clinical trialLHFPL6
Miscellaneous
canSAR (ICR)LHFPL6 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLHFPL6
EVEXLHFPL6
GoPubMedLHFPL6
iHOPLHFPL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Oct 27 10:40:32 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.