Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LHX9 (LIM homeobox 9)

Identity

Other alias-
HGNC (Hugo) LHX9
LocusID (NCBI) 56956
Atlas_Id 56597
Location 1q31.3  [Link to chromosome band 1q31]
Location_base_pair Starts at 197912505 and ends at 197930143 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LHX9   14222
Cards
Entrez_Gene (NCBI)LHX9  56956  LIM homeobox 9
Aliases
GeneCards (Weizmann)LHX9
Ensembl hg19 (Hinxton)ENSG00000143355 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143355 [Gene_View]  chr1:197912505-197930143 [Contig_View]  LHX9 [Vega]
ICGC DataPortalENSG00000143355
TCGA cBioPortalLHX9
AceView (NCBI)LHX9
Genatlas (Paris)LHX9
WikiGenes56956
SOURCE (Princeton)LHX9
Genetics Home Reference (NIH)LHX9
Genomic and cartography
GoldenPath hg38 (UCSC)LHX9  -     chr1:197912505-197930143 +  1q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LHX9  -     1q31.3   [Description]    (hg19-Feb_2009)
EnsemblLHX9 - 1q31.3 [CytoView hg19]  LHX9 - 1q31.3 [CytoView hg38]
Mapping of homologs : NCBILHX9 [Mapview hg19]  LHX9 [Mapview hg38]
OMIM606066   
Gene and transcription
Genbank (Entrez)AA316988 AJ277914 AJ277915 AJ296272 AK097614
RefSeq transcript (Entrez)NM_001014434 NM_020204
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LHX9
Cluster EST : UnigeneHs.706475 [ NCBI ]
CGAP (NCI)Hs.706475
Alternative Splicing GalleryENSG00000143355
Gene ExpressionLHX9 [ NCBI-GEO ]   LHX9 [ EBI - ARRAY_EXPRESS ]   LHX9 [ SEEK ]   LHX9 [ MEM ]
Gene Expression Viewer (FireBrowse)LHX9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56956
GTEX Portal (Tissue expression)LHX9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ69
Splice isoforms : SwissVarQ9NQ69
PhosPhoSitePlusQ9NQ69
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    Znf_LIM   
Domain families : Pfam (Sanger)Homeobox (PF00046)    LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00046    pfam00412   
Domain families : Smart (EMBL)HOX (SM00389)  LIM (SM00132)  
Conserved Domain (NCBI)LHX9
DMDM Disease mutations56956
Blocks (Seattle)LHX9
PDB (SRS)2DMQ   
PDB (PDBSum)2DMQ   
PDB (IMB)2DMQ   
PDB (RSDB)2DMQ   
Structural Biology KnowledgeBase2DMQ   
SCOP (Structural Classification of Proteins)2DMQ   
CATH (Classification of proteins structures)2DMQ   
SuperfamilyQ9NQ69
Human Protein AtlasENSG00000143355
Peptide AtlasQ9NQ69
HPRD07299
IPIIPI00328729   IPI00396103   IPI00642345   IPI00642361   IPI00479225   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ69
IntAct (EBI)Q9NQ69
FunCoupENSG00000143355
BioGRIDLHX9
STRING (EMBL)LHX9
ZODIACLHX9
Ontologies - Pathways
QuickGOQ9NQ69
Ontology : AmiGOtranscription corepressor activity  protein binding  nucleus  motor neuron axon guidance  zinc ion binding  cell proliferation  male gonad development  female gonad development  gonad morphogenesis  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBItranscription corepressor activity  protein binding  nucleus  motor neuron axon guidance  zinc ion binding  cell proliferation  male gonad development  female gonad development  gonad morphogenesis  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  
NDEx NetworkLHX9
Atlas of Cancer Signalling NetworkLHX9
Wikipedia pathwaysLHX9
Orthology - Evolution
OrthoDB56956
GeneTree (enSembl)ENSG00000143355
Phylogenetic Trees/Animal Genes : TreeFamLHX9
HOVERGENQ9NQ69
HOGENOMQ9NQ69
Homologs : HomoloGeneLHX9
Homology/Alignments : Family Browser (UCSC)LHX9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLHX9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LHX9
dbVarLHX9
ClinVarLHX9
1000_GenomesLHX9 
Exome Variant ServerLHX9
ExAC (Exome Aggregation Consortium)LHX9 (select the gene name)
Genetic variants : HAPMAP56956
Genomic Variants (DGV)LHX9 [DGVbeta]
DECIPHERLHX9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLHX9 
Mutations
ICGC Data PortalLHX9 
TCGA Data PortalLHX9 
Broad Tumor PortalLHX9
OASIS PortalLHX9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLHX9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLHX9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LHX9
DgiDB (Drug Gene Interaction Database)LHX9
DoCM (Curated mutations)LHX9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LHX9 (select a term)
intoGenLHX9
Cancer3DLHX9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606066   
Orphanet
MedgenLHX9
Genetic Testing Registry LHX9
NextProtQ9NQ69 [Medical]
TSGene56956
GENETestsLHX9
Target ValidationLHX9
Huge Navigator LHX9 [HugePedia]
snp3D : Map Gene to Disease56956
BioCentury BCIQLHX9
ClinGenLHX9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56956
Chemical/Pharm GKB GenePA30368
Clinical trialLHX9
Miscellaneous
canSAR (ICR)LHX9 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLHX9
EVEXLHX9
GoPubMedLHX9
iHOPLHX9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:15:26 CEST 2017

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