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LILRA1 (leukocyte immunoglobulin like receptor A1)

Identity

Alias_namesleukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1
Alias_symbol (synonym)LIR-6
CD85i
LIR6
Other aliasCD85I
HGNC (Hugo) LILRA1
LocusID (NCBI) 11024
Atlas_Id 65261
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54593576 and ends at 54602381 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LILRA1   6602
Cards
Entrez_Gene (NCBI)LILRA1  11024  leukocyte immunoglobulin like receptor A1
AliasesCD85I; LIR-6; LIR6
GeneCards (Weizmann)LILRA1
Ensembl hg19 (Hinxton)ENSG00000104974 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104974 [Gene_View]  chr19:54593576-54602381 [Contig_View]  LILRA1 [Vega]
ICGC DataPortalENSG00000104974
TCGA cBioPortalLILRA1
AceView (NCBI)LILRA1
Genatlas (Paris)LILRA1
WikiGenes11024
SOURCE (Princeton)LILRA1
Genetics Home Reference (NIH)LILRA1
Genomic and cartography
GoldenPath hg38 (UCSC)LILRA1  -     chr19:54593576-54602381 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LILRA1  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblLILRA1 - 19q13.42 [CytoView hg19]  LILRA1 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBILILRA1 [Mapview hg19]  LILRA1 [Mapview hg38]
OMIM604810   
Gene and transcription
Genbank (Entrez)AF025529 AF025530 AK290919 AK310122 AK311226
RefSeq transcript (Entrez)NM_001278318 NM_001278319 NM_006863
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_187693 NW_003571054 NW_003571060
Consensus coding sequences : CCDS (NCBI)LILRA1
Cluster EST : UnigeneHs.710507 [ NCBI ]
CGAP (NCI)Hs.710507
Alternative Splicing GalleryENSG00000104974
Gene ExpressionLILRA1 [ NCBI-GEO ]   LILRA1 [ EBI - ARRAY_EXPRESS ]   LILRA1 [ SEEK ]   LILRA1 [ MEM ]
Gene Expression Viewer (FireBrowse)LILRA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11024
GTEX Portal (Tissue expression)LILRA1
Human Protein AtlasENSG00000104974-LILRA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75019   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75019  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75019
Splice isoforms : SwissVarO75019
PhosPhoSitePlusO75019
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)A1B_glyco/leuk_Ig-like_rcpt    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)LILRA1
DMDM Disease mutations11024
Blocks (Seattle)LILRA1
SuperfamilyO75019
Human Protein Atlas [tissue]ENSG00000104974-LILRA1 [tissue]
Peptide AtlasO75019
HPRD07272
IPIIPI00009984   IPI00852687   IPI00792726   
Protein Interaction databases
DIP (DOE-UCLA)O75019
IntAct (EBI)O75019
FunCoupENSG00000104974
BioGRIDLILRA1
STRING (EMBL)LILRA1
ZODIACLILRA1
Ontologies - Pathways
QuickGOO75019
Ontology : AmiGOadaptive immune response  antigen binding  transmembrane signaling receptor activity  plasma membrane  defense response  cell surface receptor signaling pathway  integral component of membrane  regulation of immune response  
Ontology : EGO-EBIadaptive immune response  antigen binding  transmembrane signaling receptor activity  plasma membrane  defense response  cell surface receptor signaling pathway  integral component of membrane  regulation of immune response  
Pathways : KEGGOsteoclast differentiation   
NDEx NetworkLILRA1
Atlas of Cancer Signalling NetworkLILRA1
Wikipedia pathwaysLILRA1
Orthology - Evolution
OrthoDB11024
GeneTree (enSembl)ENSG00000104974
Phylogenetic Trees/Animal Genes : TreeFamLILRA1
HOVERGENO75019
HOGENOMO75019
Homologs : HomoloGeneLILRA1
Homology/Alignments : Family Browser (UCSC)LILRA1
Gene fusions - Rearrangements
Fusion: Tumor Portal LILRA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLILRA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LILRA1
dbVarLILRA1
ClinVarLILRA1
1000_GenomesLILRA1 
Exome Variant ServerLILRA1
ExAC (Exome Aggregation Consortium)ENSG00000104974
GNOMAD BrowserENSG00000104974
Genetic variants : HAPMAP11024
Genomic Variants (DGV)LILRA1 [DGVbeta]
DECIPHERLILRA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLILRA1 
Mutations
ICGC Data PortalLILRA1 
TCGA Data PortalLILRA1 
Broad Tumor PortalLILRA1
OASIS PortalLILRA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLILRA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLILRA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LILRA1
DgiDB (Drug Gene Interaction Database)LILRA1
DoCM (Curated mutations)LILRA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LILRA1 (select a term)
intoGenLILRA1
Cancer3DLILRA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604810   
Orphanet
MedgenLILRA1
Genetic Testing Registry LILRA1
NextProtO75019 [Medical]
TSGene11024
GENETestsLILRA1
Target ValidationLILRA1
Huge Navigator LILRA1 [HugePedia]
snp3D : Map Gene to Disease11024
BioCentury BCIQLILRA1
ClinGenLILRA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11024
Chemical/Pharm GKB GenePA30376
Clinical trialLILRA1
Miscellaneous
canSAR (ICR)LILRA1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLILRA1
EVEXLILRA1
GoPubMedLILRA1
iHOPLILRA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:53:37 CET 2017

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