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LILRA2 (leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2)

Identity

Alias_namesleukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2
Alias_symbol (synonym)LIR-7
ILT1
CD85h
LIR7
Other aliasCD85H
HGNC (Hugo) LILRA2
LocusID (NCBI) 11027
Atlas_Id 65262
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55085298 and ends at 55099028 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LILRA2 (19q13.42) / RAB11B (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LILRA2   6603
Cards
Entrez_Gene (NCBI)LILRA2  11027  leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2
AliasesCD85H; ILT1; LIR-7; LIR7
GeneCards (Weizmann)LILRA2
Ensembl hg19 (Hinxton)ENSG00000239998 [Gene_View]  chr19:55085298-55099028 [Contig_View]  LILRA2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000239998 [Gene_View]  chr19:55085298-55099028 [Contig_View]  LILRA2 [Vega]
ICGC DataPortalENSG00000239998
TCGA cBioPortalLILRA2
AceView (NCBI)LILRA2
Genatlas (Paris)LILRA2
WikiGenes11027
SOURCE (Princeton)LILRA2
Genetics Home Reference (NIH)LILRA2
Genomic and cartography
GoldenPath hg19 (UCSC)LILRA2  -     chr19:55085298-55099028 +  19q13.42   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LILRA2  -     19q13.42   [Description]    (hg38-Dec_2013)
EnsemblLILRA2 - 19q13.42 [CytoView hg19]  LILRA2 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBILILRA2 [Mapview hg19]  LILRA2 [Mapview hg38]
OMIM604812   
Gene and transcription
Genbank (Entrez)AF025531 AK130170 AK222651 AK310088 BC017412
RefSeq transcript (Entrez)NM_001130917 NM_001290270 NM_001290271 NM_006866
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_034038 NT_011109 NT_187693 NW_003571054 NW_003571060 NW_004929415
Consensus coding sequences : CCDS (NCBI)LILRA2
Cluster EST : UnigeneHs.739156 [ NCBI ]
CGAP (NCI)Hs.739156
Alternative Splicing GalleryENSG00000239998
Gene ExpressionLILRA2 [ NCBI-GEO ]   LILRA2 [ EBI - ARRAY_EXPRESS ]   LILRA2 [ SEEK ]   LILRA2 [ MEM ]
Gene Expression Viewer (FireBrowse)LILRA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11027
GTEX Portal (Tissue expression)LILRA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N149   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N149  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N149
Splice isoforms : SwissVarQ8N149
PhosPhoSitePlusQ8N149
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)A1B_glyco/leuk_Ig-like_rcpt    Ig-like_dom    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)LILRA2
DMDM Disease mutations11027
Blocks (Seattle)LILRA2
PDB (SRS)2OTP   
PDB (PDBSum)2OTP   
PDB (IMB)2OTP   
PDB (RSDB)2OTP   
Structural Biology KnowledgeBase2OTP   
SCOP (Structural Classification of Proteins)2OTP   
CATH (Classification of proteins structures)2OTP   
SuperfamilyQ8N149
Human Protein AtlasENSG00000239998
Peptide AtlasQ8N149
HPRD11992
IPIIPI00027972   IPI00157163   IPI00646137   IPI00657726   IPI00916786   
Protein Interaction databases
DIP (DOE-UCLA)Q8N149
IntAct (EBI)Q8N149
FunCoupENSG00000239998
BioGRIDLILRA2
STRING (EMBL)LILRA2
ZODIACLILRA2
Ontologies - Pathways
QuickGOQ8N149
Ontology : AmiGOimmune system process  antigen binding  receptor activity  extracellular region  defense response  signal transduction  integral component of membrane  
Ontology : EGO-EBIimmune system process  antigen binding  receptor activity  extracellular region  defense response  signal transduction  integral component of membrane  
Pathways : KEGGOsteoclast differentiation   
NDEx NetworkLILRA2
Atlas of Cancer Signalling NetworkLILRA2
Wikipedia pathwaysLILRA2
Orthology - Evolution
OrthoDB11027
GeneTree (enSembl)ENSG00000239998
Phylogenetic Trees/Animal Genes : TreeFamLILRA2
HOVERGENQ8N149
HOGENOMQ8N149
Homologs : HomoloGeneLILRA2
Homology/Alignments : Family Browser (UCSC)LILRA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLILRA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LILRA2
dbVarLILRA2
ClinVarLILRA2
1000_GenomesLILRA2 
Exome Variant ServerLILRA2
ExAC (Exome Aggregation Consortium)LILRA2 (select the gene name)
Genetic variants : HAPMAP11027
Genomic Variants (DGV)LILRA2 [DGVbeta]
DECIPHER (Syndromes)19:55085298-55099028  ENSG00000239998
CONAN: Copy Number AnalysisLILRA2 
Mutations
ICGC Data PortalLILRA2 
TCGA Data PortalLILRA2 
Broad Tumor PortalLILRA2
OASIS PortalLILRA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLILRA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLILRA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LILRA2
DgiDB (Drug Gene Interaction Database)LILRA2
DoCM (Curated mutations)LILRA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LILRA2 (select a term)
intoGenLILRA2
Cancer3DLILRA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604812   
Orphanet
MedgenLILRA2
Genetic Testing Registry LILRA2
NextProtQ8N149 [Medical]
TSGene11027
GENETestsLILRA2
Huge Navigator LILRA2 [HugePedia]
snp3D : Map Gene to Disease11027
BioCentury BCIQLILRA2
ClinGenLILRA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11027
Chemical/Pharm GKB GenePA30377
Clinical trialLILRA2
Miscellaneous
canSAR (ICR)LILRA2 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLILRA2
EVEXLILRA2
GoPubMedLILRA2
iHOPLILRA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:02 CET 2017

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