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LILRA3 (leukocyte immunoglobulin like receptor A3)

Identity

Alias_namesleukocyte immunoglobulin-like receptor
Alias_symbol (synonym)LIR-4
HM43
ILT6
HM31
LIR4
CD85e
Other aliasCD85E
ILT-6
HGNC (Hugo) LILRA3
LocusID (NCBI) 11026
Atlas_Id 54845
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54799850 and ends at 54804221 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LILRA3   6604
Cards
Entrez_Gene (NCBI)LILRA3  11026  leukocyte immunoglobulin like receptor A3
AliasesCD85E; HM31; HM43; ILT-6; 
ILT6; LIR-4; LIR4
GeneCards (Weizmann)LILRA3
Ensembl hg19 (Hinxton) [Gene_View]  chr19:54799850-54804221 [Contig_View]  LILRA3 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:54799850-54804221 [Contig_View]  LILRA3 [Vega]
TCGA cBioPortalLILRA3
AceView (NCBI)LILRA3
Genatlas (Paris)LILRA3
WikiGenes11026
SOURCE (Princeton)LILRA3
Genetics Home Reference (NIH)LILRA3
Genomic and cartography
GoldenPath hg19 (UCSC)LILRA3  -     chr19:54799850-54804221 -  19q13.42   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LILRA3  -     19q13.42   [Description]    (hg38-Dec_2013)
EnsemblLILRA3 - 19q13.42 [CytoView hg19]  LILRA3 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBILILRA3 [Mapview hg19]  LILRA3 [Mapview hg38]
OMIM604818   
Gene and transcription
Genbank (Entrez)AF014923 AF014924 AF025527 AI655471 BC028208
RefSeq transcript (Entrez)NM_001172654 NM_006865
RefSeq genomic (Entrez)NG_034046 NT_187693 NW_003571054 NW_003571055 NW_003571061
Consensus coding sequences : CCDS (NCBI)LILRA3
Cluster EST : UnigeneHs.624711 [ NCBI ]
CGAP (NCI)Hs.624711
Gene ExpressionLILRA3 [ NCBI-GEO ]   LILRA3 [ EBI - ARRAY_EXPRESS ]   LILRA3 [ SEEK ]   LILRA3 [ MEM ]
Gene Expression Viewer (FireBrowse)LILRA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11026
GTEX Portal (Tissue expression)LILRA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6C8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6C8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6C8
Splice isoforms : SwissVarQ8N6C8
PhosPhoSitePlusQ8N6C8
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)A1B_glyco/leuk_Ig-like_rcpt    Ig-like_dom    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)LILRA3
DMDM Disease mutations11026
Blocks (Seattle)LILRA3
PDB (SRS)3Q2C   
PDB (PDBSum)3Q2C   
PDB (IMB)3Q2C   
PDB (RSDB)3Q2C   
Structural Biology KnowledgeBase3Q2C   
SCOP (Structural Classification of Proteins)3Q2C   
CATH (Classification of proteins structures)3Q2C   
SuperfamilyQ8N6C8
Peptide AtlasQ8N6C8
HPRD10382
IPIIPI00329104   IPI00893824   IPI00641337   IPI00893736   IPI00893941   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6C8
IntAct (EBI)Q8N6C8
BioGRIDLILRA3
STRING (EMBL)LILRA3
ZODIACLILRA3
Ontologies - Pathways
QuickGOQ8N6C8
Ontology : AmiGOadaptive immune response  antigen binding  receptor activity  extracellular region  plasma membrane  defense response  signal transduction  
Ontology : EGO-EBIadaptive immune response  antigen binding  receptor activity  extracellular region  plasma membrane  defense response  signal transduction  
Pathways : KEGGOsteoclast differentiation   
NDEx NetworkLILRA3
Atlas of Cancer Signalling NetworkLILRA3
Wikipedia pathwaysLILRA3
Orthology - Evolution
OrthoDB11026
Phylogenetic Trees/Animal Genes : TreeFamLILRA3
HOVERGENQ8N6C8
HOGENOMQ8N6C8
Homologs : HomoloGeneLILRA3
Homology/Alignments : Family Browser (UCSC)LILRA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLILRA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LILRA3
dbVarLILRA3
ClinVarLILRA3
1000_GenomesLILRA3 
Exome Variant ServerLILRA3
ExAC (Exome Aggregation Consortium)LILRA3 (select the gene name)
Genetic variants : HAPMAP11026
Genomic Variants (DGV)LILRA3 [DGVbeta]
DECIPHER (Syndromes)19:54799850-54804221  
CONAN: Copy Number AnalysisLILRA3 
Mutations
ICGC Data PortalLILRA3 
TCGA Data PortalLILRA3 
Broad Tumor PortalLILRA3
OASIS PortalLILRA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLILRA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLILRA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LILRA3
DgiDB (Drug Gene Interaction Database)LILRA3
DoCM (Curated mutations)LILRA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LILRA3 (select a term)
intoGenLILRA3
Cancer3DLILRA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604818   
Orphanet
MedgenLILRA3
Genetic Testing Registry LILRA3
NextProtQ8N6C8 [Medical]
TSGene11026
GENETestsLILRA3
Huge Navigator LILRA3 [HugePedia]
snp3D : Map Gene to Disease11026
BioCentury BCIQLILRA3
ClinGenLILRA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11026
Chemical/Pharm GKB GenePA30378
Clinical trialLILRA3
Miscellaneous
canSAR (ICR)LILRA3 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLILRA3
EVEXLILRA3
GoPubMedLILRA3
iHOPLILRA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:07:02 CEST 2017

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