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LILRA6 (leukocyte immunoglobulin like receptor A6)

Identity

Alias_namesLILRB6
leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 6
leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
Alias_symbol (synonym)ILT8
CD85b
Other aliasILT-8
ILT5
LILRB3
HGNC (Hugo) LILRA6
LocusID (NCBI) 79168
Atlas_Id 65264
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54238953 and ends at 54242763 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGAP15 (2q22.2) / LILRA6 (19q13.42)GAS5 (1q25.1) / LILRA6 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LILRA6   15495
Cards
Entrez_Gene (NCBI)LILRA6  79168  leukocyte immunoglobulin like receptor A6
AliasesCD85b; ILT-8; ILT5; ILT8; 
LILRB3; LILRB6
GeneCards (Weizmann)LILRA6
Ensembl hg19 (Hinxton)ENSG00000244482 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244482 [Gene_View]  chr19:54238953-54242763 [Contig_View]  LILRA6 [Vega]
ICGC DataPortalENSG00000244482
TCGA cBioPortalLILRA6
AceView (NCBI)LILRA6
Genatlas (Paris)LILRA6
WikiGenes79168
SOURCE (Princeton)LILRA6
Genetics Home Reference (NIH)LILRA6
Genomic and cartography
GoldenPath hg38 (UCSC)LILRA6  -     chr19:54238953-54242763 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LILRA6  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblLILRA6 - 19q13.42 [CytoView hg19]  LILRA6 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBILILRA6 [Mapview hg19]  LILRA6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF041262 AF344430 AF344431 AF344432 AF344436
RefSeq transcript (Entrez)NM_024318
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_187693 NW_003571054 NW_003571060 NW_003571061
Consensus coding sequences : CCDS (NCBI)LILRA6
Cluster EST : UnigeneHs.688335 [ NCBI ]
CGAP (NCI)Hs.688335
Alternative Splicing GalleryENSG00000244482
Gene ExpressionLILRA6 [ NCBI-GEO ]   LILRA6 [ EBI - ARRAY_EXPRESS ]   LILRA6 [ SEEK ]   LILRA6 [ MEM ]
Gene Expression Viewer (FireBrowse)LILRA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79168
GTEX Portal (Tissue expression)LILRA6
Human Protein AtlasENSG00000244482-LILRA6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PI73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PI73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PI73
Splice isoforms : SwissVarQ6PI73
PhosPhoSitePlusQ6PI73
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)A1B_glyco/leuk_Ig-like_rcpt    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Immunoglobulin   
Domain families : Pfam (Sanger)ig (PF00047)    Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam00047    pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)LILRA6
DMDM Disease mutations79168
Blocks (Seattle)LILRA6
SuperfamilyQ6PI73
Human Protein Atlas [tissue]ENSG00000244482-LILRA6 [tissue]
Peptide AtlasQ6PI73
HPRD13737
IPIIPI00816239   IPI00894251   IPI00893151   IPI00952716   IPI00792090   IPI00641077   IPI00893602   IPI00893266   IPI00892659   IPI00892698   IPI00892568   IPI00893405   IPI00892919   
Protein Interaction databases
DIP (DOE-UCLA)Q6PI73
IntAct (EBI)Q6PI73
FunCoupENSG00000244482
BioGRIDLILRA6
STRING (EMBL)LILRA6
ZODIACLILRA6
Ontologies - Pathways
QuickGOQ6PI73
Ontology : AmiGOadaptive immune response  integral component of membrane  
Ontology : EGO-EBIadaptive immune response  integral component of membrane  
Pathways : KEGGOsteoclast differentiation   
NDEx NetworkLILRA6
Atlas of Cancer Signalling NetworkLILRA6
Wikipedia pathwaysLILRA6
Orthology - Evolution
OrthoDB79168
GeneTree (enSembl)ENSG00000244482
Phylogenetic Trees/Animal Genes : TreeFamLILRA6
HOVERGENQ6PI73
HOGENOMQ6PI73
Homologs : HomoloGeneLILRA6
Homology/Alignments : Family Browser (UCSC)LILRA6
Gene fusions - Rearrangements
Tumor Fusion PortalLILRA6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLILRA6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LILRA6
dbVarLILRA6
ClinVarLILRA6
1000_GenomesLILRA6 
Exome Variant ServerLILRA6
ExAC (Exome Aggregation Consortium)ENSG00000244482
GNOMAD BrowserENSG00000244482
Genetic variants : HAPMAP79168
Genomic Variants (DGV)LILRA6 [DGVbeta]
DECIPHERLILRA6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLILRA6 
Mutations
ICGC Data PortalLILRA6 
TCGA Data PortalLILRA6 
Broad Tumor PortalLILRA6
OASIS PortalLILRA6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLILRA6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LILRA6
DgiDB (Drug Gene Interaction Database)LILRA6
DoCM (Curated mutations)LILRA6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LILRA6 (select a term)
intoGenLILRA6
Cancer3DLILRA6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLILRA6
MedgenLILRA6
Genetic Testing Registry LILRA6
NextProtQ6PI73 [Medical]
TSGene79168
GENETestsLILRA6
Target ValidationLILRA6
Huge Navigator LILRA6 [HugePedia]
snp3D : Map Gene to Disease79168
BioCentury BCIQLILRA6
ClinGenLILRA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79168
Chemical/Pharm GKB GenePA142671548
Clinical trialLILRA6
Miscellaneous
canSAR (ICR)LILRA6 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLILRA6
EVEXLILRA6
GoPubMedLILRA6
iHOPLILRA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:38:51 CET 2017

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