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LIM2 (lens intrinsic membrane protein 2, 19kDa)

Identity

Alias_nameslens intrinsic membrane protein 2 (19kD)
lens intrinsic membrane protein 2, 19kDa
Alias_symbol (synonym)MP19
MP17
Other aliasCTRCT19
HGNC (Hugo) LIM2
LocusID (NCBI) 3982
Atlas_Id 65268
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51883163 and ends at 51891210 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ETFB (19q13.41) / LIM2 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIM2   6610
Cards
Entrez_Gene (NCBI)LIM2  3982  lens intrinsic membrane protein 2, 19kDa
AliasesCTRCT19; MP17; MP19
GeneCards (Weizmann)LIM2
Ensembl hg19 (Hinxton)ENSG00000105370 [Gene_View]  chr19:51883163-51891210 [Contig_View]  LIM2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105370 [Gene_View]  chr19:51883163-51891210 [Contig_View]  LIM2 [Vega]
ICGC DataPortalENSG00000105370
TCGA cBioPortalLIM2
AceView (NCBI)LIM2
Genatlas (Paris)LIM2
WikiGenes3982
SOURCE (Princeton)LIM2
Genetics Home Reference (NIH)LIM2
Genomic and cartography
GoldenPath hg19 (UCSC)LIM2  -     chr19:51883163-51891210 -  19q13.41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LIM2  -     19q13.41   [Description]    (hg38-Dec_2013)
EnsemblLIM2 - 19q13.41 [CytoView hg19]  LIM2 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBILIM2 [Mapview hg19]  LIM2 [Mapview hg38]
OMIM154045   615277   
Gene and transcription
Genbank (Entrez)AF340019 AF340020 BC069430 BC074916 BC074917
RefSeq transcript (Entrez)NM_001161748 NM_030657
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_012924 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)LIM2
Cluster EST : UnigeneHs.162754 [ NCBI ]
CGAP (NCI)Hs.162754
Alternative Splicing GalleryENSG00000105370
Gene ExpressionLIM2 [ NCBI-GEO ]   LIM2 [ EBI - ARRAY_EXPRESS ]   LIM2 [ SEEK ]   LIM2 [ MEM ]
Gene Expression Viewer (FireBrowse)LIM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3982
GTEX Portal (Tissue expression)LIM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55344   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP55344  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55344
Splice isoforms : SwissVarP55344
PhosPhoSitePlusP55344
Domaine pattern : Prosite (Expaxy)PMP22_2 (PS01222)   
Domains : Interpro (EBI)LMIP    PMP22/EMP/MP20/Claudin    PMP22_EMP_MP20   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
Conserved Domain (NCBI)LIM2
DMDM Disease mutations3982
Blocks (Seattle)LIM2
SuperfamilyP55344
Human Protein AtlasENSG00000105370
Peptide AtlasP55344
HPRD01097
IPIIPI00024427   IPI00219587   
Protein Interaction databases
DIP (DOE-UCLA)P55344
IntAct (EBI)P55344
FunCoupENSG00000105370
BioGRIDLIM2
STRING (EMBL)LIM2
ZODIACLIM2
Ontologies - Pathways
QuickGOP55344
Ontology : AmiGOlens development in camera-type eye  structural constituent of eye lens  plasma membrane  cell-cell junction assembly  integral component of membrane  cell junction  vesicle  
Ontology : EGO-EBIlens development in camera-type eye  structural constituent of eye lens  plasma membrane  cell-cell junction assembly  integral component of membrane  cell junction  vesicle  
NDEx NetworkLIM2
Atlas of Cancer Signalling NetworkLIM2
Wikipedia pathwaysLIM2
Orthology - Evolution
OrthoDB3982
GeneTree (enSembl)ENSG00000105370
Phylogenetic Trees/Animal Genes : TreeFamLIM2
HOVERGENP55344
HOGENOMP55344
Homologs : HomoloGeneLIM2
Homology/Alignments : Family Browser (UCSC)LIM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIM2
dbVarLIM2
ClinVarLIM2
1000_GenomesLIM2 
Exome Variant ServerLIM2
ExAC (Exome Aggregation Consortium)LIM2 (select the gene name)
Genetic variants : HAPMAP3982
Genomic Variants (DGV)LIM2 [DGVbeta]
DECIPHER (Syndromes)19:51883163-51891210  ENSG00000105370
CONAN: Copy Number AnalysisLIM2 
Mutations
ICGC Data PortalLIM2 
TCGA Data PortalLIM2 
Broad Tumor PortalLIM2
OASIS PortalLIM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch LIM2
DgiDB (Drug Gene Interaction Database)LIM2
DoCM (Curated mutations)LIM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIM2 (select a term)
intoGenLIM2
Cancer3DLIM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM154045    615277   
Orphanet14011   
MedgenLIM2
Genetic Testing Registry LIM2
NextProtP55344 [Medical]
TSGene3982
GENETestsLIM2
Huge Navigator LIM2 [HugePedia]
snp3D : Map Gene to Disease3982
BioCentury BCIQLIM2
ClinGenLIM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3982
Chemical/Pharm GKB GenePA30384
Clinical trialLIM2
Miscellaneous
canSAR (ICR)LIM2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIM2
EVEXLIM2
GoPubMedLIM2
iHOPLIM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:03 CET 2017

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