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LIMD2 (LIM domain containing 2)

Identity

Alias_symbol (synonym)MGC10986
Other alias-
HGNC (Hugo) LIMD2
LocusID (NCBI) 80774
Atlas_Id 65271
Location 17q23.3  [Link to chromosome band 17q23]
Location_base_pair Starts at 63695889 and ends at 63700159 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
INTS2 (17q23.2) / LIMD2 (17q23.3)ZNF771 (16p11.2) / LIMD2 (17q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIMD2   28142
Cards
Entrez_Gene (NCBI)LIMD2  80774  LIM domain containing 2
Aliases
GeneCards (Weizmann)LIMD2
Ensembl hg19 (Hinxton)ENSG00000136490 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136490 [Gene_View]  chr17:63695889-63700159 [Contig_View]  LIMD2 [Vega]
ICGC DataPortalENSG00000136490
TCGA cBioPortalLIMD2
AceView (NCBI)LIMD2
Genatlas (Paris)LIMD2
WikiGenes80774
SOURCE (Princeton)LIMD2
Genetics Home Reference (NIH)LIMD2
Genomic and cartography
GoldenPath hg38 (UCSC)LIMD2  -     chr17:63695889-63700159 -  17q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIMD2  -     17q23.3   [Description]    (hg19-Feb_2009)
EnsemblLIMD2 - 17q23.3 [CytoView hg19]  LIMD2 - 17q23.3 [CytoView hg38]
Mapping of homologs : NCBILIMD2 [Mapview hg19]  LIMD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA251318 AK092301 AK307353 AK310718 AY037154
RefSeq transcript (Entrez)NM_030576
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIMD2
Cluster EST : UnigeneHs.591166 [ NCBI ]
CGAP (NCI)Hs.591166
Alternative Splicing GalleryENSG00000136490
Gene ExpressionLIMD2 [ NCBI-GEO ]   LIMD2 [ EBI - ARRAY_EXPRESS ]   LIMD2 [ SEEK ]   LIMD2 [ MEM ]
Gene Expression Viewer (FireBrowse)LIMD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80774
GTEX Portal (Tissue expression)LIMD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BT23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BT23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BT23
Splice isoforms : SwissVarQ9BT23
PhosPhoSitePlusQ9BT23
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)LIMD2
DMDM Disease mutations80774
Blocks (Seattle)LIMD2
PDB (SRS)2LZU   
PDB (PDBSum)2LZU   
PDB (IMB)2LZU   
PDB (RSDB)2LZU   
Structural Biology KnowledgeBase2LZU   
SCOP (Structural Classification of Proteins)2LZU   
CATH (Classification of proteins structures)2LZU   
SuperfamilyQ9BT23
Human Protein AtlasENSG00000136490
Peptide AtlasQ9BT23
HPRD14407
IPIIPI00549972   IPI00978742   
Protein Interaction databases
DIP (DOE-UCLA)Q9BT23
IntAct (EBI)Q9BT23
FunCoupENSG00000136490
BioGRIDLIMD2
STRING (EMBL)LIMD2
ZODIACLIMD2
Ontologies - Pathways
QuickGOQ9BT23
Ontology : AmiGOprotein binding  nucleus  cytoplasm  zinc ion binding  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  zinc ion binding  
NDEx NetworkLIMD2
Atlas of Cancer Signalling NetworkLIMD2
Wikipedia pathwaysLIMD2
Orthology - Evolution
OrthoDB80774
GeneTree (enSembl)ENSG00000136490
Phylogenetic Trees/Animal Genes : TreeFamLIMD2
HOVERGENQ9BT23
HOGENOMQ9BT23
Homologs : HomoloGeneLIMD2
Homology/Alignments : Family Browser (UCSC)LIMD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIMD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIMD2
dbVarLIMD2
ClinVarLIMD2
1000_GenomesLIMD2 
Exome Variant ServerLIMD2
ExAC (Exome Aggregation Consortium)LIMD2 (select the gene name)
Genetic variants : HAPMAP80774
Genomic Variants (DGV)LIMD2 [DGVbeta]
DECIPHERLIMD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIMD2 
Mutations
ICGC Data PortalLIMD2 
TCGA Data PortalLIMD2 
Broad Tumor PortalLIMD2
OASIS PortalLIMD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIMD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIMD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIMD2
DgiDB (Drug Gene Interaction Database)LIMD2
DoCM (Curated mutations)LIMD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIMD2 (select a term)
intoGenLIMD2
Cancer3DLIMD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLIMD2
Genetic Testing Registry LIMD2
NextProtQ9BT23 [Medical]
TSGene80774
GENETestsLIMD2
Target ValidationLIMD2
Huge Navigator LIMD2 [HugePedia]
snp3D : Map Gene to Disease80774
BioCentury BCIQLIMD2
ClinGenLIMD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80774
Chemical/Pharm GKB GenePA143485528
Clinical trialLIMD2
Miscellaneous
canSAR (ICR)LIMD2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIMD2
EVEXLIMD2
GoPubMedLIMD2
iHOPLIMD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 15:55:53 CEST 2017

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