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LIME1 (Lck interacting transmembrane adaptor 1)

Identity

Alias_symbol (synonym)FLJ20406
dJ583P15.4
LIME
Other alias
HGNC (Hugo) LIME1
LocusID (NCBI) 54923
Atlas_Id 65272
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63735701 and ends at 63739107 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIME1   26016
Cards
Entrez_Gene (NCBI)LIME1  54923  Lck interacting transmembrane adaptor 1
AliasesLIME; dJ583P15.4
GeneCards (Weizmann)LIME1
Ensembl hg19 (Hinxton)ENSG00000203896 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203896 [Gene_View]  chr20:63735701-63739107 [Contig_View]  LIME1 [Vega]
ICGC DataPortalENSG00000203896
TCGA cBioPortalLIME1
AceView (NCBI)LIME1
Genatlas (Paris)LIME1
WikiGenes54923
SOURCE (Princeton)LIME1
Genetics Home Reference (NIH)LIME1
Genomic and cartography
GoldenPath hg38 (UCSC)LIME1  -     chr20:63735701-63739107 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIME1  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblLIME1 - 20q13.33 [CytoView hg19]  LIME1 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBILIME1 [Mapview hg19]  LIME1 [Mapview hg38]
OMIM609809   
Gene and transcription
Genbank (Entrez)AI763397 AK000413 AK054722 AY203957 BC017016
RefSeq transcript (Entrez)NM_001305654 NM_001305655 NM_017806
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIME1
Cluster EST : UnigeneHs.233220 [ NCBI ]
CGAP (NCI)Hs.233220
Alternative Splicing GalleryENSG00000203896
Gene ExpressionLIME1 [ NCBI-GEO ]   LIME1 [ EBI - ARRAY_EXPRESS ]   LIME1 [ SEEK ]   LIME1 [ MEM ]
Gene Expression Viewer (FireBrowse)LIME1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54923
GTEX Portal (Tissue expression)LIME1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H400   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H400  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H400
Splice isoforms : SwissVarQ9H400
PhosPhoSitePlusQ9H400
Domains : Interpro (EBI)Lime1   
Domain families : Pfam (Sanger)LIME1 (PF15332)   
Domain families : Pfam (NCBI)pfam15332   
Conserved Domain (NCBI)LIME1
DMDM Disease mutations54923
Blocks (Seattle)LIME1
SuperfamilyQ9H400
Human Protein AtlasENSG00000203896
Peptide AtlasQ9H400
HPRD07904
IPIIPI00646802   IPI00658039   IPI00643701   
Protein Interaction databases
DIP (DOE-UCLA)Q9H400
IntAct (EBI)Q9H400
FunCoupENSG00000203896
BioGRIDLIME1
STRING (EMBL)LIME1
ZODIACLIME1
Ontologies - Pathways
QuickGOQ9H400
Ontology : AmiGOspliceosomal complex disassembly  adaptive immune response  extracellular space  plasma membrane  integral component of membrane  T cell receptor signaling pathway  B cell receptor signaling pathway  U2-type post-mRNA release spliceosomal complex  
Ontology : EGO-EBIspliceosomal complex disassembly  adaptive immune response  extracellular space  plasma membrane  integral component of membrane  T cell receptor signaling pathway  B cell receptor signaling pathway  U2-type post-mRNA release spliceosomal complex  
NDEx NetworkLIME1
Atlas of Cancer Signalling NetworkLIME1
Wikipedia pathwaysLIME1
Orthology - Evolution
OrthoDB54923
GeneTree (enSembl)ENSG00000203896
Phylogenetic Trees/Animal Genes : TreeFamLIME1
HOVERGENQ9H400
HOGENOMQ9H400
Homologs : HomoloGeneLIME1
Homology/Alignments : Family Browser (UCSC)LIME1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIME1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIME1
dbVarLIME1
ClinVarLIME1
1000_GenomesLIME1 
Exome Variant ServerLIME1
ExAC (Exome Aggregation Consortium)LIME1 (select the gene name)
Genetic variants : HAPMAP54923
Genomic Variants (DGV)LIME1 [DGVbeta]
DECIPHERLIME1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIME1 
Mutations
ICGC Data PortalLIME1 
TCGA Data PortalLIME1 
Broad Tumor PortalLIME1
OASIS PortalLIME1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIME1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIME1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIME1
DgiDB (Drug Gene Interaction Database)LIME1
DoCM (Curated mutations)LIME1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIME1 (select a term)
intoGenLIME1
Cancer3DLIME1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609809   
Orphanet
MedgenLIME1
Genetic Testing Registry LIME1
NextProtQ9H400 [Medical]
TSGene54923
GENETestsLIME1
Target ValidationLIME1
Huge Navigator LIME1 [HugePedia]
snp3D : Map Gene to Disease54923
BioCentury BCIQLIME1
ClinGenLIME1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54923
Chemical/Pharm GKB GenePA142671551
Clinical trialLIME1
Miscellaneous
canSAR (ICR)LIME1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIME1
EVEXLIME1
GoPubMedLIME1
iHOPLIME1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:19:10 CEST 2017

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