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LIMS3 (LIM zinc finger domain containing 3)

Identity

Alias (NCBI)LIMS3L
LIMS4
PINCH-3
HGNC (Hugo) LIMS3
HGNC Alias namepinch 2
HGNC Previous nameLIM and senescent cell antigen-like domains 3
 LIM-type zinc finger domains 3
LocusID (NCBI) 96626
Atlas_Id 65273
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 109898688 and ends at 109906456 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LIMS3   30047
Cards
Entrez_Gene (NCBI)LIMS3    LIM zinc finger domain containing 3
AliasesLIMS3L; LIMS4; PINCH-3
GeneCards (Weizmann)LIMS3
Ensembl hg19 (Hinxton)ENSG00000256977 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256977 [Gene_View]  ENSG00000256977 [Sequence]  chr2:109898688-109906456 [Contig_View]  LIMS3 [Vega]
ICGC DataPortalENSG00000256977
TCGA cBioPortalLIMS3
AceView (NCBI)LIMS3
Genatlas (Paris)LIMS3
SOURCE (Princeton)LIMS3
Genetics Home Reference (NIH)LIMS3
Genomic and cartography
GoldenPath hg38 (UCSC)LIMS3  -     chr2:109898688-109906456 +  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIMS3  -     2q13   [Description]    (hg19-Feb_2009)
GoldenPathLIMS3 - 2q13 [CytoView hg19]  LIMS3 - 2q13 [CytoView hg38]
ImmunoBaseENSG00000256977
Genome Data Viewer NCBILIMS3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF288404 AI887629 AK096170 AK298340 AK300833
RefSeq transcript (Entrez)NM_001394901 NM_033514
Consensus coding sequences : CCDS (NCBI)LIMS3
Gene ExpressionLIMS3 [ NCBI-GEO ]   LIMS3 [ EBI - ARRAY_EXPRESS ]   LIMS3 [ SEEK ]   LIMS3 [ MEM ]
Gene Expression Viewer (FireBrowse)LIMS3 [ Firebrowse - Broad ]
GenevisibleExpression of LIMS3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)96626
GTEX Portal (Tissue expression)LIMS3
Human Protein AtlasENSG00000256977-LIMS3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CW19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CW19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CW19
PhosPhoSitePlusP0CW19
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)PINCH_1-like    Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)LIMS3
SuperfamilyP0CW19
AlphaFold pdb e-kbP0CW19   
Human Protein Atlas [tissue]ENSG00000256977-LIMS3 [tissue]
HPRD17277
Protein Interaction databases
DIP (DOE-UCLA)P0CW19
IntAct (EBI)P0CW19
BioGRIDLIMS3
STRING (EMBL)LIMS3
ZODIACLIMS3
Ontologies - Pathways
QuickGOP0CW19
Ontology : AmiGOcytoplasm  metal ion binding  
Ontology : EGO-EBIcytoplasm  metal ion binding  
NDEx NetworkLIMS3
Atlas of Cancer Signalling NetworkLIMS3
Wikipedia pathwaysLIMS3
Orthology - Evolution
OrthoDB96626
GeneTree (enSembl)ENSG00000256977
Phylogenetic Trees/Animal Genes : TreeFamLIMS3
Homologs : HomoloGeneLIMS3
Homology/Alignments : Family Browser (UCSC)LIMS3
Gene fusions - Rearrangements
Fusion : QuiverLIMS3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIMS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIMS3
dbVarLIMS3
ClinVarLIMS3
MonarchLIMS3
1000_GenomesLIMS3 
Exome Variant ServerLIMS3
GNOMAD BrowserENSG00000256977
Varsome BrowserLIMS3
ACMGLIMS3 variants
VarityP0CW19
Genomic Variants (DGV)LIMS3 [DGVbeta]
DECIPHERLIMS3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIMS3 
Mutations
ICGC Data PortalLIMS3 
TCGA Data PortalLIMS3 
Broad Tumor PortalLIMS3
OASIS PortalLIMS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIMS3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLIMS3
Mutations and Diseases : HGMDLIMS3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLIMS3
DgiDB (Drug Gene Interaction Database)LIMS3
DoCM (Curated mutations)LIMS3
CIViC (Clinical Interpretations of Variants in Cancer)LIMS3
Cancer3DLIMS3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLIMS3
MedgenLIMS3
Genetic Testing Registry LIMS3
NextProtP0CW19 [Medical]
GENETestsLIMS3
Target ValidationLIMS3
Huge Navigator LIMS3 [HugePedia]
ClinGenLIMS3
Clinical trials, drugs, therapy
MyCancerGenomeLIMS3
Protein Interactions : CTDLIMS3
Pharm GKB GenePA134917873
PharosP0CW19
Clinical trialLIMS3
Miscellaneous
canSAR (ICR)LIMS3
HarmonizomeLIMS3
DataMed IndexLIMS3
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLIMS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:55:40 CEST 2021

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