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LIMS3L (LIM and senescent cell antigen-like domains 3-like)

Identity

Other alias-
HGNC (Hugo) LIMS3L
LocusID (NCBI) 100288695
Atlas_Id 65274
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 110656009 and ends at 110664033 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIMS3L   39941
Cards
Entrez_Gene (NCBI)LIMS3L  100288695  LIM and senescent cell antigen-like domains 3-like
Aliases
GeneCards (Weizmann)LIMS3L
Ensembl hg19 (Hinxton) [Gene_View]  chr2:110656009-110664033 [Contig_View]  LIMS3L [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:110656009-110664033 [Contig_View]  LIMS3L [Vega]
TCGA cBioPortalLIMS3L
AceView (NCBI)LIMS3L
Genatlas (Paris)LIMS3L
WikiGenes100288695
SOURCE (Princeton)LIMS3L
Genetics Home Reference (NIH)LIMS3L
Genomic and cartography
GoldenPath hg19 (UCSC)LIMS3L  -     chr2:110656009-110664033 +  2q13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LIMS3L  -     2q13   [Description]    (hg38-Dec_2013)
EnsemblLIMS3L - 2q13 [CytoView hg19]  LIMS3L - 2q13 [CytoView hg38]
Mapping of homologs : NCBILIMS3L [Mapview hg19]  LIMS3L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA609556 AF288404 AK096170 AK298340 AK300833
RefSeq transcript (Entrez)NM_001205288
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929304
Consensus coding sequences : CCDS (NCBI)LIMS3L
Cluster EST : UnigeneHs.735995 [ NCBI ]
CGAP (NCI)Hs.735995
Gene ExpressionLIMS3L [ NCBI-GEO ]   LIMS3L [ EBI - ARRAY_EXPRESS ]   LIMS3L [ SEEK ]   LIMS3L [ MEM ]
Gene Expression Viewer (FireBrowse)LIMS3L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100288695
GTEX Portal (Tissue expression)LIMS3L
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CW20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CW20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CW20
Splice isoforms : SwissVarP0CW20
PhosPhoSitePlusP0CW20
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)PINCH    Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)LIMS3L
DMDM Disease mutations100288695
Blocks (Seattle)LIMS3L
SuperfamilyP0CW20
Peptide AtlasP0CW20
IPIIPI00917369   IPI01010460   IPI00925689   
Protein Interaction databases
DIP (DOE-UCLA)P0CW20
IntAct (EBI)P0CW20
BioGRIDLIMS3L
STRING (EMBL)LIMS3L
ZODIACLIMS3L
Ontologies - Pathways
QuickGOP0CW20
Ontology : AmiGOprotein binding  zinc ion binding  
Ontology : EGO-EBIprotein binding  zinc ion binding  
NDEx NetworkLIMS3L
Atlas of Cancer Signalling NetworkLIMS3L
Wikipedia pathwaysLIMS3L
Orthology - Evolution
OrthoDB100288695
Phylogenetic Trees/Animal Genes : TreeFamLIMS3L
HOVERGENP0CW20
HOGENOMP0CW20
Homologs : HomoloGeneLIMS3L
Homology/Alignments : Family Browser (UCSC)LIMS3L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIMS3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIMS3L
dbVarLIMS3L
ClinVarLIMS3L
1000_GenomesLIMS3L 
Exome Variant ServerLIMS3L
ExAC (Exome Aggregation Consortium)LIMS3L (select the gene name)
Genetic variants : HAPMAP100288695
Genomic Variants (DGV)LIMS3L [DGVbeta]
DECIPHER (Syndromes)2:110656009-110664033  
CONAN: Copy Number AnalysisLIMS3L 
Mutations
ICGC Data PortalLIMS3L 
TCGA Data PortalLIMS3L 
Broad Tumor PortalLIMS3L
OASIS PortalLIMS3L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIMS3L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIMS3L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIMS3L
DgiDB (Drug Gene Interaction Database)LIMS3L
DoCM (Curated mutations)LIMS3L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIMS3L (select a term)
intoGenLIMS3L
Cancer3DLIMS3L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLIMS3L
Genetic Testing Registry LIMS3L
NextProtP0CW20 [Medical]
TSGene100288695
GENETestsLIMS3L
Huge Navigator LIMS3L [HugePedia]
snp3D : Map Gene to Disease100288695
BioCentury BCIQLIMS3L
ClinGenLIMS3L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288695
Clinical trialLIMS3L
Miscellaneous
canSAR (ICR)LIMS3L (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIMS3L
EVEXLIMS3L
GoPubMedLIMS3L
iHOPLIMS3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:11:04 CET 2017

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