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LIN28B-AS1 (LIN28B antisense RNA 1)

Identity

Alias_namesC6orf220
LINC00577
chromosome 6 open reading frame 220
long intergenic non-protein coding RNA 577
Alias_symbol (synonym)dJ439I14.1
Other alias
HGNC (Hugo) LIN28B-AS1
LocusID (NCBI) 100113403
Atlas_Id 78302
Location 6q16.3  [Link to chromosome band 6q16]
Location_base_pair Starts at 104936294 and ends at 104940527 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIN28B-AS1   21553
Cards
Entrez_Gene (NCBI)LIN28B-AS1  100113403  LIN28B antisense RNA 1
AliasesC6orf220; LINC00577; dJ439I14.1
GeneCards (Weizmann)LIN28B-AS1
Ensembl hg19 (Hinxton)ENSG00000203809 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203809 [Gene_View]  ENSG00000203809 [Sequence]  chr6:104936294-104940527 [Contig_View]  LIN28B-AS1 [Vega]
ICGC DataPortalENSG00000203809
TCGA cBioPortalLIN28B-AS1
AceView (NCBI)LIN28B-AS1
Genatlas (Paris)LIN28B-AS1
WikiGenes100113403
SOURCE (Princeton)LIN28B-AS1
Genetics Home Reference (NIH)LIN28B-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)LIN28B-AS1  -     chr6:104936294-104940527 -  6q16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIN28B-AS1  -     6q16.3   [Description]    (hg19-Feb_2009)
EnsemblLIN28B-AS1 - 6q16.3 [CytoView hg19]  LIN28B-AS1 - 6q16.3 [CytoView hg38]
Mapping of homologs : NCBILIN28B-AS1 [Mapview hg19]  LIN28B-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF223582
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIN28B-AS1
Cluster EST : UnigeneHs.649249 [ NCBI ]
CGAP (NCI)Hs.649249
Alternative Splicing GalleryENSG00000203809
Gene ExpressionLIN28B-AS1 [ NCBI-GEO ]   LIN28B-AS1 [ EBI - ARRAY_EXPRESS ]   LIN28B-AS1 [ SEEK ]   LIN28B-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)LIN28B-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100113403
GTEX Portal (Tissue expression)LIN28B-AS1
Human Protein AtlasENSG00000203809-LIN28B-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LIN28B-AS1
DMDM Disease mutations100113403
Blocks (Seattle)LIN28B-AS1
Human Protein Atlas [tissue]ENSG00000203809-LIN28B-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000203809
BioGRIDLIN28B-AS1
STRING (EMBL)LIN28B-AS1
ZODIACLIN28B-AS1
Ontologies - Pathways
Huge Navigator LIN28B-AS1 [HugePedia]
snp3D : Map Gene to Disease100113403
BioCentury BCIQLIN28B-AS1
ClinGenLIN28B-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100113403
Chemical/Pharm GKB GenePA162380387
Clinical trialLIN28B-AS1
Miscellaneous
canSAR (ICR)LIN28B-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIN28B-AS1
EVEXLIN28B-AS1
GoPubMedLIN28B-AS1
iHOPLIN28B-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:52:13 CEST 2018

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