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LIN37 (lin-37 DREAM MuvB core complex component)

Identity

Alias_nameslin-37 homolog (C. elegans)
Alias_symbol (synonym)ZK418.4
F25965
lin-37
Other alias
HGNC (Hugo) LIN37
LocusID (NCBI) 55957
Atlas_Id 65276
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35748361 and ends at 35754519 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIN37   33234
Cards
Entrez_Gene (NCBI)LIN37  55957  lin-37 DREAM MuvB core complex component
AliasesF25965; ZK418.4; lin-37
GeneCards (Weizmann)LIN37
Ensembl hg19 (Hinxton)ENSG00000267796 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267796 [Gene_View]  chr19:35748361-35754519 [Contig_View]  LIN37 [Vega]
ICGC DataPortalENSG00000267796
TCGA cBioPortalLIN37
AceView (NCBI)LIN37
Genatlas (Paris)LIN37
WikiGenes55957
SOURCE (Princeton)LIN37
Genetics Home Reference (NIH)LIN37
Genomic and cartography
GoldenPath hg38 (UCSC)LIN37  -     chr19:35748361-35754519 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIN37  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblLIN37 - 19q13.12 [CytoView hg19]  LIN37 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBILIN37 [Mapview hg19]  LIN37 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF162447 AK293116 AK301992 BC009071 BI767008
RefSeq transcript (Entrez)NM_019104
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIN37
Cluster EST : UnigeneHs.529100 [ NCBI ]
CGAP (NCI)Hs.529100
Alternative Splicing GalleryENSG00000267796
Gene ExpressionLIN37 [ NCBI-GEO ]   LIN37 [ EBI - ARRAY_EXPRESS ]   LIN37 [ SEEK ]   LIN37 [ MEM ]
Gene Expression Viewer (FireBrowse)LIN37 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55957
GTEX Portal (Tissue expression)LIN37
Human Protein AtlasENSG00000267796-LIN37 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GY3
Splice isoforms : SwissVarQ96GY3
PhosPhoSitePlusQ96GY3
Domains : Interpro (EBI)LIN37   
Domain families : Pfam (Sanger)LIN37 (PF15306)   
Domain families : Pfam (NCBI)pfam15306   
Conserved Domain (NCBI)LIN37
DMDM Disease mutations55957
Blocks (Seattle)LIN37
SuperfamilyQ96GY3
Human Protein Atlas [tissue]ENSG00000267796-LIN37 [tissue]
Peptide AtlasQ96GY3
HPRD16872
IPIIPI00062869   IPI00847479   
Protein Interaction databases
DIP (DOE-UCLA)Q96GY3
IntAct (EBI)Q96GY3
FunCoupENSG00000267796
BioGRIDLIN37
STRING (EMBL)LIN37
ZODIACLIN37
Ontologies - Pathways
QuickGOQ96GY3
Ontology : AmiGOprotein binding  nucleoplasm  cell cycle  transcriptional repressor complex  regulation of cell cycle  
Ontology : EGO-EBIprotein binding  nucleoplasm  cell cycle  transcriptional repressor complex  regulation of cell cycle  
NDEx NetworkLIN37
Atlas of Cancer Signalling NetworkLIN37
Wikipedia pathwaysLIN37
Orthology - Evolution
OrthoDB55957
GeneTree (enSembl)ENSG00000267796
Phylogenetic Trees/Animal Genes : TreeFamLIN37
HOVERGENQ96GY3
HOGENOMQ96GY3
Homologs : HomoloGeneLIN37
Homology/Alignments : Family Browser (UCSC)LIN37
Gene fusions - Rearrangements
Fusion: Tumor Portal LIN37
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIN37 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIN37
dbVarLIN37
ClinVarLIN37
1000_GenomesLIN37 
Exome Variant ServerLIN37
ExAC (Exome Aggregation Consortium)ENSG00000267796
GNOMAD BrowserENSG00000267796
Genetic variants : HAPMAP55957
Genomic Variants (DGV)LIN37 [DGVbeta]
DECIPHERLIN37 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIN37 
Mutations
ICGC Data PortalLIN37 
TCGA Data PortalLIN37 
Broad Tumor PortalLIN37
OASIS PortalLIN37 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIN37  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIN37
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIN37
DgiDB (Drug Gene Interaction Database)LIN37
DoCM (Curated mutations)LIN37 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIN37 (select a term)
intoGenLIN37
Cancer3DLIN37(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLIN37
Genetic Testing Registry LIN37
NextProtQ96GY3 [Medical]
TSGene55957
GENETestsLIN37
Target ValidationLIN37
Huge Navigator LIN37 [HugePedia]
snp3D : Map Gene to Disease55957
BioCentury BCIQLIN37
ClinGenLIN37
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55957
Chemical/Pharm GKB GenePA162394016
Clinical trialLIN37
Miscellaneous
canSAR (ICR)LIN37 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIN37
EVEXLIN37
GoPubMedLIN37
iHOPLIN37
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:53:41 CET 2017

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