Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LIN52 (lin-52 DREAM MuvB core complex component)

Identity

Alias_namesC14orf46
chromosome 14 open reading frame 46
lin-52 homolog (C. elegans)
Other aliasc14_5549
HGNC (Hugo) LIN52
LocusID (NCBI) 91750
Atlas_Id 65277
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 74551656 and ends at 74667117 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LIN52 (14q24.3) / BBOF1 (14q24.3)LIN52 (14q24.3) / CCDC176 ()LIN52 (14q24.3) / SYNE2 (14q23.2)
LIN52 C14orf45LIN52 SYNE2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIN52   19856
Cards
Entrez_Gene (NCBI)LIN52  91750  lin-52 DREAM MuvB core complex component
AliasesC14orf46; c14_5549
GeneCards (Weizmann)LIN52
Ensembl hg19 (Hinxton) [Gene_View]  chr14:74551656-74667117 [Contig_View]  LIN52 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:74551656-74667117 [Contig_View]  LIN52 [Vega]
TCGA cBioPortalLIN52
AceView (NCBI)LIN52
Genatlas (Paris)LIN52
WikiGenes91750
SOURCE (Princeton)LIN52
Genetics Home Reference (NIH)LIN52
Genomic and cartography
GoldenPath hg19 (UCSC)LIN52  -     chr14:74551656-74667117 +  14q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LIN52  -     14q24.3   [Description]    (hg38-Dec_2013)
EnsemblLIN52 - 14q24.3 [CytoView hg19]  LIN52 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBILIN52 [Mapview hg19]  LIN52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023979 AK055422 AK307062 BC009539 BC094003
RefSeq transcript (Entrez)NM_001024674
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)LIN52
Cluster EST : UnigeneHs.612866 [ NCBI ]
CGAP (NCI)Hs.612866
Gene ExpressionLIN52 [ NCBI-GEO ]   LIN52 [ EBI - ARRAY_EXPRESS ]   LIN52 [ SEEK ]   LIN52 [ MEM ]
Gene Expression Viewer (FireBrowse)LIN52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91750
GTEX Portal (Tissue expression)LIN52
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ52LA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ52LA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ52LA3
Splice isoforms : SwissVarQ52LA3
PhosPhoSitePlusQ52LA3
Domains : Interpro (EBI)DREAM_LIN52   
Domain families : Pfam (Sanger)Ret_tiss (PF10044)   
Domain families : Pfam (NCBI)pfam10044   
Conserved Domain (NCBI)LIN52
DMDM Disease mutations91750
Blocks (Seattle)LIN52
SuperfamilyQ52LA3
Peptide AtlasQ52LA3
HPRD18708
IPIIPI00398998   IPI01025516   IPI01026481   
Protein Interaction databases
DIP (DOE-UCLA)Q52LA3
IntAct (EBI)Q52LA3
BioGRIDLIN52
STRING (EMBL)LIN52
ZODIACLIN52
Ontologies - Pathways
QuickGOQ52LA3
Ontology : AmiGOG2/M transition of mitotic cell cycle  mitotic cell cycle  nucleoplasm  transcription, DNA-templated  regulation of cell cycle  DRM complex  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  mitotic cell cycle  nucleoplasm  transcription, DNA-templated  regulation of cell cycle  DRM complex  
NDEx NetworkLIN52
Atlas of Cancer Signalling NetworkLIN52
Wikipedia pathwaysLIN52
Orthology - Evolution
OrthoDB91750
Phylogenetic Trees/Animal Genes : TreeFamLIN52
HOVERGENQ52LA3
HOGENOMQ52LA3
Homologs : HomoloGeneLIN52
Homology/Alignments : Family Browser (UCSC)LIN52
Gene fusions - Rearrangements
Fusion: TCGALIN52 C14orf45
Fusion: TCGALIN52 SYNE2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIN52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIN52
dbVarLIN52
ClinVarLIN52
1000_GenomesLIN52 
Exome Variant ServerLIN52
ExAC (Exome Aggregation Consortium)LIN52 (select the gene name)
Genetic variants : HAPMAP91750
Genomic Variants (DGV)LIN52 [DGVbeta]
DECIPHER (Syndromes)14:74551656-74667117  
CONAN: Copy Number AnalysisLIN52 
Mutations
ICGC Data PortalLIN52 
TCGA Data PortalLIN52 
Broad Tumor PortalLIN52
OASIS PortalLIN52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIN52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIN52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIN52
DgiDB (Drug Gene Interaction Database)LIN52
DoCM (Curated mutations)LIN52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIN52 (select a term)
intoGenLIN52
Cancer3DLIN52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLIN52
Genetic Testing Registry LIN52
NextProtQ52LA3 [Medical]
TSGene91750
GENETestsLIN52
Huge Navigator LIN52 [HugePedia]
snp3D : Map Gene to Disease91750
BioCentury BCIQLIN52
ClinGenLIN52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91750
Chemical/Pharm GKB GenePA162394039
Clinical trialLIN52
Miscellaneous
canSAR (ICR)LIN52 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIN52
EVEXLIN52
GoPubMedLIN52
iHOPLIN52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:06 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.