Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00032 (long intergenic non-protein coding RNA 32)

Identity

Alias_namesC9orf14
NCRNA00032
chromosome 9 open reading frame 14
non-protein coding RNA 32
Other alias
HGNC (Hugo) LINC00032
LocusID (NCBI) 158035
Atlas_Id 52340
Location 9p21.2  [Link to chromosome band 9p21]
Location_base_pair Starts at 27245684 and ends at 27282793 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00032   16506
Cards
Entrez_Gene (NCBI)LINC00032  158035  long intergenic non-protein coding RNA 32
AliasesC9orf14; NCRNA00032
GeneCards (Weizmann)LINC00032
Ensembl hg19 (Hinxton)ENSG00000231459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231459 [Gene_View]  chr9:27245684-27282793 [Contig_View]  LINC00032 [Vega]
ICGC DataPortalENSG00000231459
TCGA cBioPortalLINC00032
AceView (NCBI)LINC00032
Genatlas (Paris)LINC00032
WikiGenes158035
SOURCE (Princeton)LINC00032
Genetics Home Reference (NIH)LINC00032
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00032  -     chr9:27245684-27282793 -  9p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00032  -     9p21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00032 - 9p21.2 [CytoView hg19]  LINC00032 - 9p21.2 [CytoView hg38]
Mapping of homologs : NCBILINC00032 [Mapview hg19]  LINC00032 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF418573 AF507950 AF507951 AF507952 AF507953
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00032
Cluster EST : UnigeneHs.201554 [ NCBI ]
CGAP (NCI)Hs.201554
Alternative Splicing GalleryENSG00000231459
Gene ExpressionLINC00032 [ NCBI-GEO ]   LINC00032 [ EBI - ARRAY_EXPRESS ]   LINC00032 [ SEEK ]   LINC00032 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00032 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158035
GTEX Portal (Tissue expression)LINC00032
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C843   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C843  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C843
Splice isoforms : SwissVarP0C843
PhosPhoSitePlusP0C843
Domains : Interpro (EBI)EloA-BP1   
Domain families : Pfam (Sanger)EloA-BP1 (PF15870)   
Domain families : Pfam (NCBI)pfam15870   
Conserved Domain (NCBI)LINC00032
DMDM Disease mutations158035
Blocks (Seattle)LINC00032
SuperfamilyP0C843
Human Protein AtlasENSG00000231459
Peptide AtlasP0C843
IPIIPI00902587   
Protein Interaction databases
DIP (DOE-UCLA)P0C843
IntAct (EBI)P0C843
FunCoupENSG00000231459
BioGRIDLINC00032
STRING (EMBL)LINC00032
ZODIACLINC00032
Ontologies - Pathways
QuickGOP0C843
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00032
Atlas of Cancer Signalling NetworkLINC00032
Wikipedia pathwaysLINC00032
Orthology - Evolution
OrthoDB158035
GeneTree (enSembl)ENSG00000231459
Phylogenetic Trees/Animal Genes : TreeFamLINC00032
HOVERGENP0C843
HOGENOMP0C843
Homologs : HomoloGeneLINC00032
Homology/Alignments : Family Browser (UCSC)LINC00032
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00032 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00032
dbVarLINC00032
ClinVarLINC00032
1000_GenomesLINC00032 
Exome Variant ServerLINC00032
ExAC (Exome Aggregation Consortium)LINC00032 (select the gene name)
Genetic variants : HAPMAP158035
Genomic Variants (DGV)LINC00032 [DGVbeta]
DECIPHERLINC00032 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00032 
Mutations
ICGC Data PortalLINC00032 
TCGA Data PortalLINC00032 
Broad Tumor PortalLINC00032
OASIS PortalLINC00032 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00032
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00032
DgiDB (Drug Gene Interaction Database)LINC00032
DoCM (Curated mutations)LINC00032 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00032 (select a term)
intoGenLINC00032
Cancer3DLINC00032(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00032
Genetic Testing Registry LINC00032
NextProtP0C843 [Medical]
TSGene158035
GENETestsLINC00032
Target ValidationLINC00032
Huge Navigator LINC00032 [HugePedia]
snp3D : Map Gene to Disease158035
BioCentury BCIQLINC00032
ClinGenLINC00032
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158035
Chemical/Pharm GKB GenePA164723571
Clinical trialLINC00032
Miscellaneous
canSAR (ICR)LINC00032 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00032
EVEXLINC00032
GoPubMedLINC00032
iHOPLINC00032
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:40:36 CEST 2017

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