Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00052 (long intergenic non-protein coding RNA 52)

Identity

Alias_namesTMEM83
NCRNA00052
transmembrane protein 83
non-protein coding RNA 52
Alias_symbol (synonym)FLJ31461
Other alias
HGNC (Hugo) LINC00052
LocusID (NCBI) 145978
Atlas_Id 65284
Location 15q25.3  [Link to chromosome band 15q25]
Location_base_pair Starts at 87576929 and ends at 87579686 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00052   26455
Cards
Entrez_Gene (NCBI)LINC00052  145978  long intergenic non-protein coding RNA 52
AliasesNCRNA00052; TMEM83
GeneCards (Weizmann)LINC00052
Ensembl hg19 (Hinxton)ENSG00000259527 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259527 [Gene_View]  chr15:87576929-87579686 [Contig_View]  LINC00052 [Vega]
ICGC DataPortalENSG00000259527
TCGA cBioPortalLINC00052
AceView (NCBI)LINC00052
Genatlas (Paris)LINC00052
WikiGenes145978
SOURCE (Princeton)LINC00052
Genetics Home Reference (NIH)LINC00052
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00052  -     chr15:87576929-87579686 +  15q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00052  -     15q25.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00052 - 15q25.3 [CytoView hg19]  LINC00052 - 15q25.3 [CytoView hg38]
Mapping of homologs : NCBILINC00052 [Mapview hg19]  LINC00052 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056023 BC066551
RefSeq transcript (Entrez)NM_152454
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00052
Cluster EST : UnigeneHs.350808 [ NCBI ]
CGAP (NCI)Hs.350808
Alternative Splicing GalleryENSG00000259527
Gene ExpressionLINC00052 [ NCBI-GEO ]   LINC00052 [ EBI - ARRAY_EXPRESS ]   LINC00052 [ SEEK ]   LINC00052 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00052 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145978
GTEX Portal (Tissue expression)LINC00052
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N35
Splice isoforms : SwissVarQ96N35
PhosPhoSitePlusQ96N35
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00052
DMDM Disease mutations145978
Blocks (Seattle)LINC00052
SuperfamilyQ96N35
Human Protein AtlasENSG00000259527
Peptide AtlasQ96N35
HPRD08101
IPIIPI00043368   
Protein Interaction databases
DIP (DOE-UCLA)Q96N35
IntAct (EBI)Q96N35
FunCoupENSG00000259527
BioGRIDLINC00052
STRING (EMBL)LINC00052
ZODIACLINC00052
Ontologies - Pathways
QuickGOQ96N35
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLINC00052
Atlas of Cancer Signalling NetworkLINC00052
Wikipedia pathwaysLINC00052
Orthology - Evolution
OrthoDB145978
GeneTree (enSembl)ENSG00000259527
Phylogenetic Trees/Animal Genes : TreeFamLINC00052
HOVERGENQ96N35
HOGENOMQ96N35
Homologs : HomoloGeneLINC00052
Homology/Alignments : Family Browser (UCSC)LINC00052
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00052 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00052
dbVarLINC00052
ClinVarLINC00052
1000_GenomesLINC00052 
Exome Variant ServerLINC00052
ExAC (Exome Aggregation Consortium)LINC00052 (select the gene name)
Genetic variants : HAPMAP145978
Genomic Variants (DGV)LINC00052 [DGVbeta]
DECIPHERLINC00052 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00052 
Mutations
ICGC Data PortalLINC00052 
TCGA Data PortalLINC00052 
Broad Tumor PortalLINC00052
OASIS PortalLINC00052 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00052
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00052
DgiDB (Drug Gene Interaction Database)LINC00052
DoCM (Curated mutations)LINC00052 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00052 (select a term)
intoGenLINC00052
Cancer3DLINC00052(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00052
Genetic Testing Registry LINC00052
NextProtQ96N35 [Medical]
TSGene145978
GENETestsLINC00052
Target ValidationLINC00052
Huge Navigator LINC00052 [HugePedia]
snp3D : Map Gene to Disease145978
BioCentury BCIQLINC00052
ClinGenLINC00052
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145978
Chemical/Pharm GKB GenePA164723573
Clinical trialLINC00052
Miscellaneous
canSAR (ICR)LINC00052 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00052
EVEXLINC00052
GoPubMedLINC00052
iHOPLINC00052
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:55:56 CEST 2017

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