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LINC00052 (long intergenic non-protein coding RNA 52)

Identity

Other aliasNCRNA00052
TMEM83
HGNC (Hugo) LINC00052
LocusID (NCBI) 145978
Atlas_Id 57429
Location 9p21.2  [Link to chromosome band 9p21]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00052   26455
Cards
Entrez_Gene (NCBI)LINC00052  145978  long intergenic non-protein coding RNA 52
AliasesNCRNA00052; TMEM83
GeneCards (Weizmann)LINC00052
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  LINC00052 [Vega]
TCGA cBioPortalLINC00052
AceView (NCBI)LINC00052
Genatlas (Paris)LINC00052
WikiGenes145978
SOURCE (Princeton)LINC00052
Genetics Home Reference (NIH)LINC00052
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00052  -  
GoldenPath hg19 (UCSC)LINC00052  -  
EnsemblLINC00052 - [CytoView hg19]  LINC00052 - [CytoView hg38]
Mapping of homologs : NCBILINC00052 [Mapview hg19]  LINC00052 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056023 BC066551
RefSeq transcript (Entrez)NM_152454
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00052
Cluster EST : UnigeneHs.350808 [ NCBI ]
CGAP (NCI)Hs.350808
Gene ExpressionLINC00052 [ NCBI-GEO ]   LINC00052 [ EBI - ARRAY_EXPRESS ]   LINC00052 [ SEEK ]   LINC00052 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00052 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145978
GTEX Portal (Tissue expression)LINC00052
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N35
Splice isoforms : SwissVarQ96N35
PhosPhoSitePlusQ96N35
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00052
DMDM Disease mutations145978
Blocks (Seattle)LINC00052
SuperfamilyQ96N35
Peptide AtlasQ96N35
IPIIPI00043368   
Protein Interaction databases
DIP (DOE-UCLA)Q96N35
IntAct (EBI)Q96N35
BioGRIDLINC00052
STRING (EMBL)LINC00052
ZODIACLINC00052
Ontologies - Pathways
QuickGOQ96N35
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLINC00052
Atlas of Cancer Signalling NetworkLINC00052
Wikipedia pathwaysLINC00052
Orthology - Evolution
OrthoDB145978
Phylogenetic Trees/Animal Genes : TreeFamLINC00052
HOVERGENQ96N35
HOGENOMQ96N35
Homologs : HomoloGeneLINC00052
Homology/Alignments : Family Browser (UCSC)LINC00052
Gene fusions - Rearrangements
Fusion : QuiverLINC00052
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00052 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00052
dbVarLINC00052
ClinVarLINC00052
1000_GenomesLINC00052 
Exome Variant ServerLINC00052
Varsome BrowserLINC00052
Genetic variants : HAPMAP145978
Genomic Variants (DGV)LINC00052 [DGVbeta]
DECIPHERLINC00052 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00052 
Mutations
ICGC Data PortalLINC00052 
TCGA Data PortalLINC00052 
Broad Tumor PortalLINC00052
OASIS PortalLINC00052 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00052
BioMutasearch LINC00052
DgiDB (Drug Gene Interaction Database)LINC00052
DoCM (Curated mutations)LINC00052 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00052 (select a term)
intoGenLINC00052
Cancer3DLINC00052(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00052
MedgenLINC00052
Genetic Testing Registry LINC00052
NextProtQ96N35 [Medical]
TSGene145978
GENETestsLINC00052
Target ValidationLINC00052
Huge Navigator LINC00052 [HugePedia]
snp3D : Map Gene to Disease145978
BioCentury BCIQLINC00052
ClinGenLINC00052
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145978
Chemical/Pharm GKB GenePA164723573
Clinical trialLINC00052
Miscellaneous
canSAR (ICR)LINC00052 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00052
EVEXLINC00052
GoPubMedLINC00052
iHOPLINC00052
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 15:00:04 CEST 2018

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