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LINC00052 (long intergenic non-protein coding RNA 52)

Identity

Alias (NCBI)NCRNA00052
TMEM83
HGNC (Hugo) LINC00052
HGNC Alias symbFLJ31461
HGNC Previous nameTMEM83
 NCRNA00052
HGNC Previous nametransmembrane protein 83
 non-protein coding RNA 52
LocusID (NCBI) 145978
Atlas_Id 57429
Location 15q25.3  [Link to chromosome band 15q25]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LINC00052   26455
Cards
Entrez_Gene (NCBI)LINC00052    long intergenic non-protein coding RNA 52
AliasesNCRNA00052; TMEM83
GeneCards (Weizmann)LINC00052
Ensembl hg19 (Hinxton)ENSG00000259527 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259527 [Gene_View]  ENSG00000259527 [Sequence]  - [Contig_View]  LINC00052 [Vega]
ICGC DataPortalENSG00000259527
TCGA cBioPortalLINC00052
AceView (NCBI)LINC00052
Genatlas (Paris)LINC00052
SOURCE (Princeton)LINC00052
Genetics Home Reference (NIH)LINC00052
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00052  -  
GoldenPath hg19 (UCSC)LINC00052  -  
GoldenPathLINC00052 - [CytoView hg19]  LINC00052 - [CytoView hg38]
ImmunoBaseENSG00000259527
Genome Data Viewer NCBILINC00052 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK056023 BC066551
RefSeq transcript (Entrez)NM_152454
Consensus coding sequences : CCDS (NCBI)LINC00052
Gene ExpressionLINC00052 [ NCBI-GEO ]   LINC00052 [ EBI - ARRAY_EXPRESS ]   LINC00052 [ SEEK ]   LINC00052 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00052 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00052 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145978
GTEX Portal (Tissue expression)LINC00052
Human Protein AtlasENSG00000259527-LINC00052 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N35
PhosPhoSitePlusQ96N35
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00052
SuperfamilyQ96N35
AlphaFold pdb e-kbQ96N35   
Human Protein Atlas [tissue]ENSG00000259527-LINC00052 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q96N35
IntAct (EBI)Q96N35
BioGRIDLINC00052
STRING (EMBL)LINC00052
ZODIACLINC00052
Ontologies - Pathways
QuickGOQ96N35
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLINC00052
Atlas of Cancer Signalling NetworkLINC00052
Wikipedia pathwaysLINC00052
Orthology - Evolution
OrthoDB145978
GeneTree (enSembl)ENSG00000259527
Phylogenetic Trees/Animal Genes : TreeFamLINC00052
Homologs : HomoloGeneLINC00052
Homology/Alignments : Family Browser (UCSC)LINC00052
Gene fusions - Rearrangements
Fusion : QuiverLINC00052
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00052 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00052
dbVarLINC00052
ClinVarLINC00052
MonarchLINC00052
1000_GenomesLINC00052 
Exome Variant ServerLINC00052
GNOMAD BrowserENSG00000259527
Varsome BrowserLINC00052
ACMGLINC00052 variants
VarityQ96N35
Genomic Variants (DGV)LINC00052 [DGVbeta]
DECIPHERLINC00052 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00052 
Mutations
ICGC Data PortalLINC00052 
TCGA Data PortalLINC00052 
Broad Tumor PortalLINC00052
OASIS PortalLINC00052 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00052
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLINC00052
DgiDB (Drug Gene Interaction Database)LINC00052
DoCM (Curated mutations)LINC00052
CIViC (Clinical Interpretations of Variants in Cancer)LINC00052
Cancer3DLINC00052
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00052
MedgenLINC00052
Genetic Testing Registry LINC00052
NextProtQ96N35 [Medical]
GENETestsLINC00052
Target ValidationLINC00052
Huge Navigator LINC00052 [HugePedia]
ClinGenLINC00052
Clinical trials, drugs, therapy
MyCancerGenomeLINC00052
Protein Interactions : CTDLINC00052
Pharm GKB GenePA164723573
PharosQ96N35
Clinical trialLINC00052
Miscellaneous
canSAR (ICR)LINC00052
HarmonizomeLINC00052
DataMed IndexLINC00052
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC00052
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:15:59 CEST 2021

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