Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00083 (long intergenic non-protein coding RNA 83)

Identity

Alias_namesNCRNA00083
non-protein coding RNA 83
Alias_symbol (synonym)FLJ44005
RP4-593C16.2
Other alias
HGNC (Hugo) LINC00083
LocusID (NCBI) 400797
Atlas_Id 65285
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 178463034 and ends at 178468769 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC00083   34521
Cards
Entrez_Gene (NCBI)LINC00083  400797  long intergenic non-protein coding RNA 83
AliasesNCRNA00083
GeneCards (Weizmann)LINC00083
Ensembl hg19 (Hinxton) [Gene_View]  chr1:178463034-178468769 [Contig_View]  LINC00083 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:178463034-178468769 [Contig_View]  LINC00083 [Vega]
TCGA cBioPortalLINC00083
AceView (NCBI)LINC00083
Genatlas (Paris)LINC00083
WikiGenes400797
SOURCE (Princeton)LINC00083
Genetics Home Reference (NIH)LINC00083
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00083  -     chr1:178463034-178468769 -  1q25.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00083  -     1q25.2   [Description]    (hg38-Dec_2013)
EnsemblLINC00083 - 1q25.2 [CytoView hg19]  LINC00083 - 1q25.2 [CytoView hg38]
Mapping of homologs : NCBILINC00083 [Mapview hg19]  LINC00083 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125993 LN607887 LN607888
RefSeq transcript (Entrez)NM_001001689
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)LINC00083
Cluster EST : UnigeneHs.591460 [ NCBI ]
CGAP (NCI)Hs.591460
Gene ExpressionLINC00083 [ NCBI-GEO ]   LINC00083 [ EBI - ARRAY_EXPRESS ]   LINC00083 [ SEEK ]   LINC00083 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00083 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400797
GTEX Portal (Tissue expression)LINC00083
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZU45   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZU45  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZU45
Splice isoforms : SwissVarQ6ZU45
PhosPhoSitePlusQ6ZU45
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)LINC00083
DMDM Disease mutations400797
Blocks (Seattle)LINC00083
SuperfamilyQ6ZU45
Peptide AtlasQ6ZU45
HPRD16970
IPIIPI00418994   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZU45
IntAct (EBI)Q6ZU45
BioGRIDLINC00083
STRING (EMBL)LINC00083
ZODIACLINC00083
Ontologies - Pathways
QuickGOQ6ZU45
Ontology : AmiGOcarbohydrate binding  
Ontology : EGO-EBIcarbohydrate binding  
NDEx NetworkLINC00083
Atlas of Cancer Signalling NetworkLINC00083
Wikipedia pathwaysLINC00083
Orthology - Evolution
OrthoDB400797
Phylogenetic Trees/Animal Genes : TreeFamLINC00083
HOVERGENQ6ZU45
HOGENOMQ6ZU45
Homologs : HomoloGeneLINC00083
Homology/Alignments : Family Browser (UCSC)LINC00083
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00083 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00083
dbVarLINC00083
ClinVarLINC00083
1000_GenomesLINC00083 
Exome Variant ServerLINC00083
ExAC (Exome Aggregation Consortium)LINC00083 (select the gene name)
Genetic variants : HAPMAP400797
Genomic Variants (DGV)LINC00083 [DGVbeta]
DECIPHER (Syndromes)1:178463034-178468769  
CONAN: Copy Number AnalysisLINC00083 
Mutations
ICGC Data PortalLINC00083 
TCGA Data PortalLINC00083 
Broad Tumor PortalLINC00083
OASIS PortalLINC00083 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00083
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00083
DgiDB (Drug Gene Interaction Database)LINC00083
DoCM (Curated mutations)LINC00083 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00083 (select a term)
intoGenLINC00083
Cancer3DLINC00083(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00083
Genetic Testing Registry LINC00083
NextProtQ6ZU45 [Medical]
TSGene400797
GENETestsLINC00083
Huge Navigator LINC00083 [HugePedia]
snp3D : Map Gene to Disease400797
BioCentury BCIQLINC00083
ClinGenLINC00083
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400797
Clinical trialLINC00083
Miscellaneous
canSAR (ICR)LINC00083 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00083
EVEXLINC00083
GoPubMedLINC00083
iHOPLINC00083
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:07 CET 2017

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