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LINC00102 (long intergenic non-protein coding RNA 102)

Identity

Alias_namesNCRNA00102
non-protein coding RNA 102
Alias_symbol (synonym)OTTHUMT00000055623
Other alias
HGNC (Hugo) LINC00102
LocusID (NCBI) 100359394
Atlas_Id 65290
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 2612991 and ends at 2615347 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00102   30470
Cards
Entrez_Gene (NCBI)LINC00102  100359394  long intergenic non-protein coding RNA 102
AliasesNCRNA00102
GeneCards (Weizmann)LINC00102
Ensembl hg19 (Hinxton)ENSG00000230542 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230542 [Gene_View]  chrX:2612991-2615347 [Contig_View]  LINC00102 [Vega]
ICGC DataPortalENSG00000230542
TCGA cBioPortalLINC00102
AceView (NCBI)LINC00102
Genatlas (Paris)LINC00102
WikiGenes100359394
SOURCE (Princeton)LINC00102
Genetics Home Reference (NIH)LINC00102
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00102  -     chrX:2612991-2615347 -  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00102  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblLINC00102 - Xp22.33 [CytoView hg19]  LINC00102 - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBILINC00102 [Mapview hg19]  LINC00102 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC034825
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00102
Cluster EST : UnigeneHs.571720 [ NCBI ]
CGAP (NCI)Hs.571720
Alternative Splicing GalleryENSG00000230542
Gene ExpressionLINC00102 [ NCBI-GEO ]   LINC00102 [ EBI - ARRAY_EXPRESS ]   LINC00102 [ SEEK ]   LINC00102 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00102 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100359394
GTEX Portal (Tissue expression)LINC00102
Human Protein AtlasENSG00000230542-LINC00102 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00102
DMDM Disease mutations100359394
Blocks (Seattle)LINC00102
Human Protein Atlas [tissue]ENSG00000230542-LINC00102 [tissue]
Protein Interaction databases
FunCoupENSG00000230542
BioGRIDLINC00102
STRING (EMBL)LINC00102
ZODIACLINC00102
Ontologies - Pathways
Huge Navigator LINC00102 [HugePedia]
snp3D : Map Gene to Disease100359394
BioCentury BCIQLINC00102
ClinGenLINC00102
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100359394
Clinical trialLINC00102
Miscellaneous
canSAR (ICR)LINC00102 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00102
EVEXLINC00102
GoPubMedLINC00102
iHOPLINC00102
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:53:43 CET 2017

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