Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00106 (long intergenic non-protein coding RNA 106)

Identity

Alias_namesCXYorf8
NCRNA00106
chromosome X and Y open reading frame 8
non-protein coding RNA 106
Alias_symbol (synonym)OTTHUMG00000021061
Other alias
HGNC (Hugo) LINC00106
LocusID (NCBI) 751580
Atlas_Id 77682
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 1397025 and ends at 1399398 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00106   31843
Cards
Entrez_Gene (NCBI)LINC00106  751580  long intergenic non-protein coding RNA 106
AliasesCXYorf8; NCRNA00106
GeneCards (Weizmann)LINC00106
Ensembl hg19 (Hinxton)ENSG00000236871 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236871 [Gene_View]  chrX:1397025-1399398 [Contig_View]  LINC00106 [Vega]
ICGC DataPortalENSG00000236871
TCGA cBioPortalLINC00106
AceView (NCBI)LINC00106
Genatlas (Paris)LINC00106
WikiGenes751580
SOURCE (Princeton)LINC00106
Genetics Home Reference (NIH)LINC00106
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00106  -     chrX:1397025-1399398 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00106  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblLINC00106 - Xp22.33 [CytoView hg19]  LINC00106 - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBILINC00106 [Mapview hg19]  LINC00106 [Mapview hg38]
Gene and transcription
Genbank (Entrez)D29222 H65775 H65776 R00579
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00106
Cluster EST : UnigeneHs.495569 [ NCBI ]
CGAP (NCI)Hs.495569
Alternative Splicing GalleryENSG00000236871
Gene ExpressionLINC00106 [ NCBI-GEO ]   LINC00106 [ EBI - ARRAY_EXPRESS ]   LINC00106 [ SEEK ]   LINC00106 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00106 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)751580
GTEX Portal (Tissue expression)LINC00106
Human Protein AtlasENSG00000236871-LINC00106 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00106
DMDM Disease mutations751580
Blocks (Seattle)LINC00106
Human Protein Atlas [tissue]ENSG00000236871-LINC00106 [tissue]
Protein Interaction databases
FunCoupENSG00000236871
BioGRIDLINC00106
STRING (EMBL)LINC00106
ZODIACLINC00106
Ontologies - Pathways
Huge Navigator LINC00106 [HugePedia]
snp3D : Map Gene to Disease751580
BioCentury BCIQLINC00106
ClinGenLINC00106
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD751580
Chemical/Pharm GKB GenePA164723652
Clinical trialLINC00106
Miscellaneous
canSAR (ICR)LINC00106 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00106
EVEXLINC00106
GoPubMedLINC00106
iHOPLINC00106
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:53:43 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.