Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00114 (long intergenic non-protein coding RNA 114)

Identity

Alias_namesC21orf24
NCRNA00114
chromosome 21 open reading frame 24
non-protein coding RNA 114
Other alias
HGNC (Hugo) LINC00114
LocusID (NCBI) 400866
Atlas_Id 65294
Location 21q22.2  [Link to chromosome band 21q22]
Location_base_pair Starts at 38739025 and ends at 38742053 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00114   1265
Cards
Entrez_Gene (NCBI)LINC00114  400866  long intergenic non-protein coding RNA 114
AliasesC21orf24; NCRNA00114
GeneCards (Weizmann)LINC00114
Ensembl hg19 (Hinxton)ENSG00000223806 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223806 [Gene_View]  chr21:38739025-38742053 [Contig_View]  LINC00114 [Vega]
ICGC DataPortalENSG00000223806
TCGA cBioPortalLINC00114
AceView (NCBI)LINC00114
Genatlas (Paris)LINC00114
WikiGenes400866
SOURCE (Princeton)LINC00114
Genetics Home Reference (NIH)LINC00114
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00114  -     chr21:38739025-38742053 -  21q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00114  -     21q22.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00114 - 21q22.2 [CytoView hg19]  LINC00114 - 21q22.2 [CytoView hg38]
Mapping of homologs : NCBILINC00114 [Mapview hg19]  LINC00114 [Mapview hg38]
OMIM611723   
Gene and transcription
Genbank (Entrez)AY204744 AY204745 AY204746 AY204747 AY204748
RefSeq transcript (Entrez)NM_001001789
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00114
Cluster EST : UnigeneHs.278704 [ NCBI ]
CGAP (NCI)Hs.278704
Alternative Splicing GalleryENSG00000223806
Gene ExpressionLINC00114 [ NCBI-GEO ]   LINC00114 [ EBI - ARRAY_EXPRESS ]   LINC00114 [ SEEK ]   LINC00114 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00114 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400866
GTEX Portal (Tissue expression)LINC00114
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6XXX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6XXX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6XXX2
Splice isoforms : SwissVarQ6XXX2
PhosPhoSitePlusQ6XXX2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00114
DMDM Disease mutations400866
Blocks (Seattle)LINC00114
SuperfamilyQ6XXX2
Human Protein AtlasENSG00000223806
Peptide AtlasQ6XXX2
HPRD10744
IPIIPI00418688   IPI00978684   
Protein Interaction databases
DIP (DOE-UCLA)Q6XXX2
IntAct (EBI)Q6XXX2
FunCoupENSG00000223806
BioGRIDLINC00114
STRING (EMBL)LINC00114
ZODIACLINC00114
Ontologies - Pathways
QuickGOQ6XXX2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00114
Atlas of Cancer Signalling NetworkLINC00114
Wikipedia pathwaysLINC00114
Orthology - Evolution
OrthoDB400866
GeneTree (enSembl)ENSG00000223806
Phylogenetic Trees/Animal Genes : TreeFamLINC00114
HOVERGENQ6XXX2
HOGENOMQ6XXX2
Homologs : HomoloGeneLINC00114
Homology/Alignments : Family Browser (UCSC)LINC00114
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00114 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00114
dbVarLINC00114
ClinVarLINC00114
1000_GenomesLINC00114 
Exome Variant ServerLINC00114
ExAC (Exome Aggregation Consortium)LINC00114 (select the gene name)
Genetic variants : HAPMAP400866
Genomic Variants (DGV)LINC00114 [DGVbeta]
DECIPHERLINC00114 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00114 
Mutations
ICGC Data PortalLINC00114 
TCGA Data PortalLINC00114 
Broad Tumor PortalLINC00114
OASIS PortalLINC00114 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00114
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00114
DgiDB (Drug Gene Interaction Database)LINC00114
DoCM (Curated mutations)LINC00114 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00114 (select a term)
intoGenLINC00114
Cancer3DLINC00114(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611723   
Orphanet
MedgenLINC00114
Genetic Testing Registry LINC00114
NextProtQ6XXX2 [Medical]
TSGene400866
GENETestsLINC00114
Target ValidationLINC00114
Huge Navigator LINC00114 [HugePedia]
snp3D : Map Gene to Disease400866
BioCentury BCIQLINC00114
ClinGenLINC00114
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400866
Chemical/Pharm GKB GenePA164723661
Clinical trialLINC00114
Miscellaneous
canSAR (ICR)LINC00114 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00114
EVEXLINC00114
GoPubMedLINC00114
iHOPLINC00114
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:55:58 CEST 2017

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