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LINC00116 (long intergenic non-protein coding RNA 116)

Identity

Alias_namesNCRNA00116
non-protein coding RNA 116
Other alias
HGNC (Hugo) LINC00116
LocusID (NCBI) 205251
Atlas_Id 65296
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 110211529 and ends at 110222940 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00116   27339
Cards
Entrez_Gene (NCBI)LINC00116  205251  long intergenic non-protein coding RNA 116
AliasesNCRNA00116
GeneCards (Weizmann)LINC00116
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:110211529-110222940 [Contig_View]  LINC00116 [Vega]
TCGA cBioPortalLINC00116
AceView (NCBI)LINC00116
Genatlas (Paris)LINC00116
WikiGenes205251
SOURCE (Princeton)LINC00116
Genetics Home Reference (NIH)LINC00116
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00116  -     chr2:110211529-110222940 -  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00116  -     2q13   [Description]    (hg19-Feb_2009)
EnsemblLINC00116 - 2q13 [CytoView hg19]  LINC00116 - 2q13 [CytoView hg38]
Mapping of homologs : NCBILINC00116 [Mapview hg19]  LINC00116 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF504645 BC031315 BC064430 BC133660
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00116
Cluster EST : UnigeneHs.128499 [ NCBI ]
CGAP (NCI)Hs.128499
Gene ExpressionLINC00116 [ NCBI-GEO ]   LINC00116 [ EBI - ARRAY_EXPRESS ]   LINC00116 [ SEEK ]   LINC00116 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00116 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)205251
GTEX Portal (Tissue expression)LINC00116
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCU8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCU8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCU8
Splice isoforms : SwissVarQ8NCU8
PhosPhoSitePlusQ8NCU8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00116
DMDM Disease mutations205251
Blocks (Seattle)LINC00116
SuperfamilyQ8NCU8
Peptide AtlasQ8NCU8
HPRD14131
IPIIPI00168462   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCU8
IntAct (EBI)Q8NCU8
BioGRIDLINC00116
STRING (EMBL)LINC00116
ZODIACLINC00116
Ontologies - Pathways
QuickGOQ8NCU8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLINC00116
Atlas of Cancer Signalling NetworkLINC00116
Wikipedia pathwaysLINC00116
Orthology - Evolution
OrthoDB205251
Phylogenetic Trees/Animal Genes : TreeFamLINC00116
HOVERGENQ8NCU8
HOGENOMQ8NCU8
Homologs : HomoloGeneLINC00116
Homology/Alignments : Family Browser (UCSC)LINC00116
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00116 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00116
dbVarLINC00116
ClinVarLINC00116
1000_GenomesLINC00116 
Exome Variant ServerLINC00116
ExAC (Exome Aggregation Consortium)LINC00116 (select the gene name)
Genetic variants : HAPMAP205251
Genomic Variants (DGV)LINC00116 [DGVbeta]
DECIPHERLINC00116 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00116 
Mutations
ICGC Data PortalLINC00116 
TCGA Data PortalLINC00116 
Broad Tumor PortalLINC00116
OASIS PortalLINC00116 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00116
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00116
DgiDB (Drug Gene Interaction Database)LINC00116
DoCM (Curated mutations)LINC00116 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00116 (select a term)
intoGenLINC00116
Cancer3DLINC00116(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00116
Genetic Testing Registry LINC00116
NextProtQ8NCU8 [Medical]
TSGene205251
GENETestsLINC00116
Huge Navigator LINC00116 [HugePedia]
snp3D : Map Gene to Disease205251
BioCentury BCIQLINC00116
ClinGenLINC00116
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD205251
Chemical/Pharm GKB GenePA164723669
Clinical trialLINC00116
Miscellaneous
canSAR (ICR)LINC00116 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00116
EVEXLINC00116
GoPubMedLINC00116
iHOPLINC00116
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:19:34 CEST 2017

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