Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00158 (long intergenic non-protein coding RNA 158)

Identity

Alias_namesC21orf42
NCRNA00158
chromosome 21 open reading frame 42
non-protein coding RNA 158
Other alias
HGNC (Hugo) LINC00158
LocusID (NCBI) 54072
Atlas_Id 78136
Location 21q21.2  [Link to chromosome band 21q21]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00158   1283
Cards
Entrez_Gene (NCBI)LINC00158  54072  long intergenic non-protein coding RNA 158
AliasesC21orf42; NCRNA00158
GeneCards (Weizmann)LINC00158
Ensembl hg19 (Hinxton)ENSG00000185433 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185433 [Gene_View]  - [Contig_View]  LINC00158 [Vega]
ICGC DataPortalENSG00000185433
TCGA cBioPortalLINC00158
AceView (NCBI)LINC00158
Genatlas (Paris)LINC00158
WikiGenes54072
SOURCE (Princeton)LINC00158
Genetics Home Reference (NIH)LINC00158
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00158  -  
GoldenPath hg19 (UCSC)LINC00158  -  
EnsemblLINC00158 - [CytoView hg19]  LINC00158 - [CytoView hg38]
Mapping of homologs : NCBILINC00158 [Mapview hg19]  LINC00158 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA437209 AY035382 AY035383
RefSeq transcript (Entrez)NM_058184
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00158
Cluster EST : UnigeneHs.234016 [ NCBI ]
CGAP (NCI)Hs.234016
Alternative Splicing GalleryENSG00000185433
Gene ExpressionLINC00158 [ NCBI-GEO ]   LINC00158 [ EBI - ARRAY_EXPRESS ]   LINC00158 [ SEEK ]   LINC00158 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00158 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54072
GTEX Portal (Tissue expression)LINC00158
Human Protein AtlasENSG00000185433-LINC00158 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58513   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58513  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58513
Splice isoforms : SwissVarP58513
PhosPhoSitePlusP58513
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00158
DMDM Disease mutations54072
Blocks (Seattle)LINC00158
SuperfamilyP58513
Human Protein Atlas [tissue]ENSG00000185433-LINC00158 [tissue]
Peptide AtlasP58513
HPRD10748
IPIIPI00067918   
Protein Interaction databases
DIP (DOE-UCLA)P58513
IntAct (EBI)P58513
FunCoupENSG00000185433
BioGRIDLINC00158
STRING (EMBL)LINC00158
ZODIACLINC00158
Ontologies - Pathways
QuickGOP58513
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00158
Atlas of Cancer Signalling NetworkLINC00158
Wikipedia pathwaysLINC00158
Orthology - Evolution
OrthoDB54072
GeneTree (enSembl)ENSG00000185433
Phylogenetic Trees/Animal Genes : TreeFamLINC00158
HOVERGENP58513
HOGENOMP58513
Homologs : HomoloGeneLINC00158
Homology/Alignments : Family Browser (UCSC)LINC00158
Gene fusions - Rearrangements
Fusion: Tumor Portal LINC00158
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00158 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00158
dbVarLINC00158
ClinVarLINC00158
1000_GenomesLINC00158 
Exome Variant ServerLINC00158
ExAC (Exome Aggregation Consortium)ENSG00000185433
GNOMAD BrowserENSG00000185433
Genetic variants : HAPMAP54072
Genomic Variants (DGV)LINC00158 [DGVbeta]
DECIPHERLINC00158 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00158 
Mutations
ICGC Data PortalLINC00158 
TCGA Data PortalLINC00158 
Broad Tumor PortalLINC00158
OASIS PortalLINC00158 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00158
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00158
DgiDB (Drug Gene Interaction Database)LINC00158
DoCM (Curated mutations)LINC00158 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00158 (select a term)
intoGenLINC00158
Cancer3DLINC00158(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00158
Genetic Testing Registry LINC00158
NextProtP58513 [Medical]
TSGene54072
GENETestsLINC00158
Target ValidationLINC00158
Huge Navigator LINC00158 [HugePedia]
snp3D : Map Gene to Disease54072
BioCentury BCIQLINC00158
ClinGenLINC00158
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54072
Chemical/Pharm GKB GenePA164723725
Clinical trialLINC00158
Miscellaneous
canSAR (ICR)LINC00158 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00158
EVEXLINC00158
GoPubMedLINC00158
iHOPLINC00158
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:53:44 CET 2017

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