Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00161 (long intergenic non-protein coding RNA 161)

Identity

Alias_namesC21orf100
NCRNA00161
chromosome 21 open reading frame 100
non-protein coding RNA 161
Other alias
HGNC (Hugo) LINC00161
LocusID (NCBI) 118421
Atlas_Id 65299
Location 21q21.3  [Link to chromosome band 21q21]
Location_base_pair Starts at 29911640 and ends at 29912677 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00161   17138
Cards
Entrez_Gene (NCBI)LINC00161  118421  long intergenic non-protein coding RNA 161
AliasesC21orf100; NCRNA00161
GeneCards (Weizmann)LINC00161
Ensembl hg19 (Hinxton)ENSG00000226935 [Gene_View]  chr21:29911640-29912677 [Contig_View]  LINC00161 [Vega]
Ensembl hg38 (Hinxton)ENSG00000226935 [Gene_View]  chr21:29911640-29912677 [Contig_View]  LINC00161 [Vega]
ICGC DataPortalENSG00000226935
TCGA cBioPortalLINC00161
AceView (NCBI)LINC00161
Genatlas (Paris)LINC00161
WikiGenes118421
SOURCE (Princeton)LINC00161
Genetics Home Reference (NIH)LINC00161
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00161  -     chr21:29911640-29912677 +  21q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00161  -     21q21.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00161 - 21q21.3 [CytoView hg19]  LINC00161 - 21q21.3 [CytoView hg38]
Mapping of homologs : NCBILINC00161 [Mapview hg19]  LINC00161 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW451670 AY063458 AY063459 BC101414 BC101416
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)LINC00161
Cluster EST : UnigeneHs.438549 [ NCBI ]
CGAP (NCI)Hs.438549
Alternative Splicing GalleryENSG00000226935
Gene ExpressionLINC00161 [ NCBI-GEO ]   LINC00161 [ EBI - ARRAY_EXPRESS ]   LINC00161 [ SEEK ]   LINC00161 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00161 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)118421
GTEX Portal (Tissue expression)LINC00161
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00161
DMDM Disease mutations118421
Blocks (Seattle)LINC00161
Human Protein AtlasENSG00000226935
HPRD10733
IPIIPI00168278   
Protein Interaction databases
FunCoupENSG00000226935
BioGRIDLINC00161
STRING (EMBL)LINC00161
ZODIACLINC00161
Ontologies - Pathways
Huge Navigator LINC00161 [HugePedia]
snp3D : Map Gene to Disease118421
BioCentury BCIQLINC00161
ClinGenLINC00161
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118421
Chemical/Pharm GKB GenePA164723728
Clinical trialLINC00161
Miscellaneous
canSAR (ICR)LINC00161 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00161
EVEXLINC00161
GoPubMedLINC00161
iHOPLINC00161
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:10 CET 2017

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