Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00162 (long intergenic non-protein coding RNA 162)

Identity

Other aliasC21orf113
NCRNA00162
NLC1-C
NLC1C
PRED74
HGNC (Hugo) LINC00162
LocusID (NCBI) 378825
Atlas_Id 65300
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 46419122 and ends at 46424642 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00162   19725
Cards
Entrez_Gene (NCBI)LINC00162  378825  long intergenic non-protein coding RNA 162
AliasesC21orf113; NCRNA00162; NLC1-C; NLC1C; 
PRED74
GeneCards (Weizmann)LINC00162
Ensembl hg19 (Hinxton)ENSG00000275874 [Gene_View]  chr21:46419122-46424642 [Contig_View]  LINC00162 [Vega]
Ensembl hg38 (Hinxton)ENSG00000275874 [Gene_View]  chr21:46419122-46424642 [Contig_View]  LINC00162 [Vega]
ICGC DataPortalENSG00000275874
TCGA cBioPortalLINC00162
AceView (NCBI)LINC00162
Genatlas (Paris)LINC00162
WikiGenes378825
SOURCE (Princeton)LINC00162
Genetics Home Reference (NIH)LINC00162
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00162  -     chr21:46419122-46424642 -  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00162  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00162 - 21q22.3 [CytoView hg19]  LINC00162 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC00162 [Mapview hg19]  LINC00162 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC027456 CA441515 HG511912
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)LINC00162
Cluster EST : UnigeneHs.534828 [ NCBI ]
CGAP (NCI)Hs.534828
Alternative Splicing GalleryENSG00000275874
Gene ExpressionLINC00162 [ NCBI-GEO ]   LINC00162 [ EBI - ARRAY_EXPRESS ]   LINC00162 [ SEEK ]   LINC00162 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00162 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)378825
GTEX Portal (Tissue expression)LINC00162
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C852   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C852  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C852
Splice isoforms : SwissVarP0C852
PhosPhoSitePlusP0C852
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00162
DMDM Disease mutations378825
Blocks (Seattle)LINC00162
SuperfamilyP0C852
Human Protein AtlasENSG00000275874
Peptide AtlasP0C852
IPIIPI00902475   IPI00985385   
Protein Interaction databases
DIP (DOE-UCLA)P0C852
IntAct (EBI)P0C852
FunCoupENSG00000275874
BioGRIDLINC00162
STRING (EMBL)LINC00162
ZODIACLINC00162
Ontologies - Pathways
QuickGOP0C852
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00162
Atlas of Cancer Signalling NetworkLINC00162
Wikipedia pathwaysLINC00162
Orthology - Evolution
OrthoDB378825
GeneTree (enSembl)ENSG00000275874
Phylogenetic Trees/Animal Genes : TreeFamLINC00162
HOVERGENP0C852
HOGENOMP0C852
Homologs : HomoloGeneLINC00162
Homology/Alignments : Family Browser (UCSC)LINC00162
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00162 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00162
dbVarLINC00162
ClinVarLINC00162
1000_GenomesLINC00162 
Exome Variant ServerLINC00162
ExAC (Exome Aggregation Consortium)LINC00162 (select the gene name)
Genetic variants : HAPMAP378825
Genomic Variants (DGV)LINC00162 [DGVbeta]
DECIPHER (Syndromes)21:46419122-46424642  ENSG00000275874
CONAN: Copy Number AnalysisLINC00162 
Mutations
ICGC Data PortalLINC00162 
TCGA Data PortalLINC00162 
Broad Tumor PortalLINC00162
OASIS PortalLINC00162 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00162
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00162
DgiDB (Drug Gene Interaction Database)LINC00162
DoCM (Curated mutations)LINC00162 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00162 (select a term)
intoGenLINC00162
Cancer3DLINC00162(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00162
Genetic Testing Registry LINC00162
NextProtP0C852 [Medical]
TSGene378825
GENETestsLINC00162
Huge Navigator LINC00162 [HugePedia]
snp3D : Map Gene to Disease378825
BioCentury BCIQLINC00162
ClinGenLINC00162
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378825
Chemical/Pharm GKB GenePA164723729
Clinical trialLINC00162
Miscellaneous
canSAR (ICR)LINC00162 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00162
EVEXLINC00162
GoPubMedLINC00162
iHOPLINC00162
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:10 CET 2017

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