Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00163 (long intergenic non-protein coding RNA 163)

Identity

Alias_namesC21orf134
NCRNA00163
chromosome 21 open reading frame 134
non-protein coding RNA 163
Alias_symbol (synonym)NLC1-A
NLC1A
Other alias
HGNC (Hugo) LINC00163
LocusID (NCBI) 727699
Atlas_Id 65301
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44989864 and ends at 44994086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00163   33165
Cards
Entrez_Gene (NCBI)LINC00163  727699  long intergenic non-protein coding RNA 163
AliasesC21orf134; NCRNA00163; NLC1-A; NLC1A
GeneCards (Weizmann)LINC00163
Ensembl hg19 (Hinxton)ENSG00000234880 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234880 [Gene_View]  chr21:44989864-44994086 [Contig_View]  LINC00163 [Vega]
ICGC DataPortalENSG00000234880
TCGA cBioPortalLINC00163
AceView (NCBI)LINC00163
Genatlas (Paris)LINC00163
WikiGenes727699
SOURCE (Princeton)LINC00163
Genetics Home Reference (NIH)LINC00163
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00163  -     chr21:44989864-44994086 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00163  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00163 - 21q22.3 [CytoView hg19]  LINC00163 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC00163 [Mapview hg19]  LINC00163 [Mapview hg38]
OMIM610259   
Gene and transcription
Genbank (Entrez)BC036902 BC046564
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00163
Cluster EST : UnigeneHs.397403 [ NCBI ]
CGAP (NCI)Hs.397403
Alternative Splicing GalleryENSG00000234880
Gene ExpressionLINC00163 [ NCBI-GEO ]   LINC00163 [ EBI - ARRAY_EXPRESS ]   LINC00163 [ SEEK ]   LINC00163 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00163 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Claqssifhcition]  [NCI60]
BioGPS (Tissue expression)727699
GTEX Portal (Tissue expression)LINC00163
Human Protein AtlasENSG00000234880-LINC00163 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00163
DMDM Disease mutations727699
Blocks (Seattle)LINC00163
Human Protein Atlas [tissue]ENSG00000234880-LINC00163 [tissue]
Protein Interaction databases
FunCoupENSG00000234880
BioGRIDLINC00163
STRING (EMBL)LINC00163
ZODIACLINC00163
Ontologies - Pathways
Huge Navigator LINC00163 [HugePedia]
snp3D : Map Gene to Disease727699
BioCentury BCIQLINC00163
ClinGenLINC00163
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD727699
Chemical/Pharm GKB GenePA164723730
Clinical trialLINC00163
Miscellaneous
canSAR (ICR)LINC00163 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00163
EVEXLINC00163
GoPubMedLINC00163
iHOPLINC00163
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:36:21 CET 2017

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