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LINC00167 (long intergenic non-protein coding RNA 167)

Identity

Alias_namesC11orf37
NCRNA00167
chromosome 11 open reading frame 37
non-protein coding RNA 167
Alias_symbol (synonym)FLJ31394
Other alias
HGNC (Hugo) LINC00167
LocusID (NCBI) 440072
Atlas_Id 65303
Location 11q24.3  [Link to chromosome band 11q24]
Location_base_pair Starts at 130002624 and ends at 130005486 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00167   30468
Cards
Entrez_Gene (NCBI)LINC00167  440072  long intergenic non-protein coding RNA 167
AliasesC11orf37; NCRNA00167
GeneCards (Weizmann)LINC00167
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:130002624-130005486 [Contig_View]  LINC00167 [Vega]
TCGA cBioPortalLINC00167
AceView (NCBI)LINC00167
Genatlas (Paris)LINC00167
WikiGenes440072
SOURCE (Princeton)LINC00167
Genetics Home Reference (NIH)LINC00167
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00167  -     chr11:130002624-130005486 +  11q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00167  -     11q24.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00167 - 11q24.3 [CytoView hg19]  LINC00167 - 11q24.3 [CytoView hg38]
Mapping of homologs : NCBILINC00167 [Mapview hg19]  LINC00167 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055956 BC137306 BC137307
RefSeq transcript (Entrez)NM_001007543
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00167
Cluster EST : UnigeneHs.630600 [ NCBI ]
CGAP (NCI)Hs.630600
Gene ExpressionLINC00167 [ NCBI-GEO ]   LINC00167 [ EBI - ARRAY_EXPRESS ]   LINC00167 [ SEEK ]   LINC00167 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00167 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440072
GTEX Portal (Tissue expression)LINC00167
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N53
Splice isoforms : SwissVarQ96N53
PhosPhoSitePlusQ96N53
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00167
DMDM Disease mutations440072
Blocks (Seattle)LINC00167
SuperfamilyQ96N53
Peptide AtlasQ96N53
HPRD16931
IPIIPI00043432   
Protein Interaction databases
DIP (DOE-UCLA)Q96N53
IntAct (EBI)Q96N53
BioGRIDLINC00167
STRING (EMBL)LINC00167
ZODIACLINC00167
Ontologies - Pathways
QuickGOQ96N53
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00167
Atlas of Cancer Signalling NetworkLINC00167
Wikipedia pathwaysLINC00167
Orthology - Evolution
OrthoDB440072
Phylogenetic Trees/Animal Genes : TreeFamLINC00167
HOVERGENQ96N53
HOGENOMQ96N53
Homologs : HomoloGeneLINC00167
Homology/Alignments : Family Browser (UCSC)LINC00167
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00167 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00167
dbVarLINC00167
ClinVarLINC00167
1000_GenomesLINC00167 
Exome Variant ServerLINC00167
ExAC (Exome Aggregation Consortium)LINC00167 (select the gene name)
Genetic variants : HAPMAP440072
Genomic Variants (DGV)LINC00167 [DGVbeta]
DECIPHERLINC00167 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00167 
Mutations
ICGC Data PortalLINC00167 
TCGA Data PortalLINC00167 
Broad Tumor PortalLINC00167
OASIS PortalLINC00167 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00167
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00167
DgiDB (Drug Gene Interaction Database)LINC00167
DoCM (Curated mutations)LINC00167 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00167 (select a term)
intoGenLINC00167
Cancer3DLINC00167(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00167
Genetic Testing Registry LINC00167
NextProtQ96N53 [Medical]
TSGene440072
GENETestsLINC00167
Target ValidationLINC00167
Huge Navigator LINC00167 [HugePedia]
snp3D : Map Gene to Disease440072
BioCentury BCIQLINC00167
ClinGenLINC00167
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440072
Chemical/Pharm GKB GenePA164723754
Clinical trialLINC00167
Miscellaneous
canSAR (ICR)LINC00167 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00167
EVEXLINC00167
GoPubMedLINC00167
iHOPLINC00167
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:56:01 CEST 2017

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