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LINC00173 (long intergenic non-protein coding RNA 173)

Identity

Alias_namesNCRNA00173
non-protein coding RNA 173
Alias_symbol (synonym)FLJ42957
Other alias
HGNC (Hugo) LINC00173
LocusID (NCBI) 100287569
Atlas_Id 65304
Location 12q24.22  [Link to chromosome band 12q24]
Location_base_pair Starts at 116533422 and ends at 116535521 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00173   33791
Cards
Entrez_Gene (NCBI)LINC00173  100287569  long intergenic non-protein coding RNA 173
AliasesNCRNA00173
GeneCards (Weizmann)LINC00173
Ensembl hg19 (Hinxton)ENSG00000196668 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196668 [Gene_View]  chr12:116533422-116535521 [Contig_View]  LINC00173 [Vega]
ICGC DataPortalENSG00000196668
TCGA cBioPortalLINC00173
AceView (NCBI)LINC00173
Genatlas (Paris)LINC00173
WikiGenes100287569
SOURCE (Princeton)LINC00173
Genetics Home Reference (NIH)LINC00173
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00173  -     chr12:116533422-116535521 +  12q24.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00173  -     12q24.22   [Description]    (hg19-Feb_2009)
EnsemblLINC00173 - 12q24.22 [CytoView hg19]  LINC00173 - 12q24.22 [CytoView hg38]
Mapping of homologs : NCBILINC00173 [Mapview hg19]  LINC00173 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124947 BC038547 BC121822 BC122872
RefSeq transcript (Entrez)NM_207436
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00173
Cluster EST : UnigeneHs.441601 [ NCBI ]
CGAP (NCI)Hs.441601
Alternative Splicing GalleryENSG00000196668
Gene ExpressionLINC00173 [ NCBI-GEO ]   LINC00173 [ EBI - ARRAY_EXPRESS ]   LINC00173 [ SEEK ]   LINC00173 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00173 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287569
GTEX Portal (Tissue expression)LINC00173
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZV60   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZV60  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZV60
Splice isoforms : SwissVarQ6ZV60
PhosPhoSitePlusQ6ZV60
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00173
DMDM Disease mutations100287569
Blocks (Seattle)LINC00173
SuperfamilyQ6ZV60
Human Protein AtlasENSG00000196668
Peptide AtlasQ6ZV60
IPIIPI00410510   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZV60
IntAct (EBI)Q6ZV60
FunCoupENSG00000196668
BioGRIDLINC00173
STRING (EMBL)LINC00173
ZODIACLINC00173
Ontologies - Pathways
QuickGOQ6ZV60
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00173
Atlas of Cancer Signalling NetworkLINC00173
Wikipedia pathwaysLINC00173
Orthology - Evolution
OrthoDB100287569
GeneTree (enSembl)ENSG00000196668
Phylogenetic Trees/Animal Genes : TreeFamLINC00173
HOVERGENQ6ZV60
HOGENOMQ6ZV60
Homologs : HomoloGeneLINC00173
Homology/Alignments : Family Browser (UCSC)LINC00173
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00173 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00173
dbVarLINC00173
ClinVarLINC00173
1000_GenomesLINC00173 
Exome Variant ServerLINC00173
ExAC (Exome Aggregation Consortium)LINC00173 (select the gene name)
Genetic variants : HAPMAP100287569
Genomic Variants (DGV)LINC00173 [DGVbeta]
DECIPHERLINC00173 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00173 
Mutations
ICGC Data PortalLINC00173 
TCGA Data PortalLINC00173 
Broad Tumor PortalLINC00173
OASIS PortalLINC00173 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00173
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00173
DgiDB (Drug Gene Interaction Database)LINC00173
DoCM (Curated mutations)LINC00173 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00173 (select a term)
intoGenLINC00173
Cancer3DLINC00173(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00173
Genetic Testing Registry LINC00173
NextProtQ6ZV60 [Medical]
TSGene100287569
GENETestsLINC00173
Target ValidationLINC00173
Huge Navigator LINC00173 [HugePedia]
snp3D : Map Gene to Disease100287569
BioCentury BCIQLINC00173
ClinGenLINC00173
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287569
Chemical/Pharm GKB GenePA164723771
Clinical trialLINC00173
Miscellaneous
canSAR (ICR)LINC00173 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00173
EVEXLINC00173
GoPubMedLINC00173
iHOPLINC00173
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:48 CEST 2017

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